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    LOC284912 uncharacterized LOC284912 [ Homo sapiens (human) ]

    Gene ID: 284912, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC284912
    Gene description
    uncharacterized LOC284912
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC284912 in Genome Data Viewer
    Location:
    22q12.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (35627576..35637934, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (36086545..36097661, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:35976583-35977082 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:35979057-35979558 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:35985272-35986247 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:35987987-35988548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:35994347-35995088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:36001614-36002114 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:36018115-36018630 Neighboring gene Sharpr-MPRA regulatory region 11360 Neighboring gene myoglobin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18911 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:36034149-36034650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:36034651-36035150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18912 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18913 Neighboring gene apolipoprotein L6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18914 Neighboring gene mitochondrial ribosomal protein S16 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    General gene information

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    Clone Names

    • MGC3170

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      35627576..35637934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001755514.1 RNA Sequence

    2. XR_938217.2 RNA Sequence

    3. XR_001755513.1 RNA Sequence

    4. XR_938216.2 RNA Sequence

    5. XR_938215.2 RNA Sequence

    6. XR_938218.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      36086545..36097661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007090638.1 RNA Sequence

    2. XR_007090636.1 RNA Sequence

    3. XR_007090635.1 RNA Sequence

    4. XR_007090634.1 RNA Sequence

    5. XR_007090633.1 RNA Sequence

    6. XR_007090637.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_203375.1: Suppressed sequence

      Description
      NM_203375.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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