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    LINC03074 long intergenic non-protein coding RNA 3074 [ Homo sapiens (human) ]

    Gene ID: 100505685, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC03074provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3074provided by HGNC
    Primary source
    HGNC:HGNC:56654
    See related
    Ensembl:ENSG00000251249 AllianceGenome:HGNC:56654
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 11.2) See more
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    Genomic context

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    See LINC03074 in Genome Data Viewer
    Location:
    4q31.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (151955977..151969376)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (155279079..155292467)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (152877129..152890528)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127898557 Neighboring gene uncharacterized LOC102724700 Neighboring gene uncharacterized LOC127898556 Neighboring gene RNA, 5S ribosomal pseudogene 169 Neighboring gene NANOG hESC enhancer GRCh37_chr4:152925827-152926328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22025 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:152945037-152945536 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15749 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22026 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22028 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:153021562-153022062 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:153022063-153022563 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:153022858-153024057 Neighboring gene long intergenic non-protein coding RNA 2273

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. A testis-specific lncRNA functions as a post-transcriptional regulator of MDM2 and stimulates apoptosis of testicular germ cell tumor cells. Ito S, et al. Cell Death Discov, 2024 Aug 3. PMID 39097584, Free PMC Article
    2. A panel of extracellular vesicle long noncoding RNAs in seminal plasma for predicting testicular spermatozoa in nonobstructive azoospermia patients. Xie Y, et al. Hum Reprod, 2020 Nov 1. PMID 32914196
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183803.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC097375
      Related
      ENST00000515329.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      151955977..151969376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      155279079..155292467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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