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    LOC101928014 uncharacterized LOC101928014 [ Homo sapiens (human) ]

    Gene ID: 101928014, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101928014
    Gene description
    uncharacterized LOC101928014
    See related
    Ensembl:ENSG00000231990
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101928014 in Genome Data Viewer
    Location:
    9q22.31
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (93808349..93858339)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (105976228..106026337)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (96570631..96620621)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96360469-96361050 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28626 Neighboring gene microRNA 548au Neighboring gene PHD finger protein 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96397750-96398479 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96405763-96406603 Neighboring gene keratin-associated protein 5-5-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96431943-96432456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96440627-96441126 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_109906 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_109914 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:96562895-96563100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96569945-96570665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96571818-96572396 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96572397-96572974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96572975-96573552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96573553-96574130 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_109955 Neighboring gene microRNA 4291 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96632251-96632981 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96656649-96657524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96658478-96658978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96664804-96665335 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96670812-96671504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96682210-96682710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96683612-96684112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96710391-96711318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96711319-96712244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96715091-96715655 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96715656-96716219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96717631-96718162 Neighboring gene uncharacterized LOC124902216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96718163-96718693 Neighboring gene BARX1 divergent transcript Neighboring gene BARX homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188448.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL442224
      Related
      ENST00000669339.2

    2. NR_188449.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL442224
      Related
      ENST00000668608.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      93808349..93858339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      105976228..106026337
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials