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    PF3D7_1119800 alternative splicing factor ASF-1, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 810752, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1119800
    Gene description
    alternative splicing factor ASF-1, putative
    Locus tag
    PF3D7_1119800
    See related
    PlasmoDB:PF3D7_1119800; VEuPathDB:PF3D7_1119800
    Gene type
    protein coding
    RNA name
    alternative splicing factor ASF-1, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1119800 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Sequence:
    Chromosome: 11; NC_037282.1 (746854..747456, complement)

    Chromosome 11 - NC_037282.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FTSH, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene protein transport protein SEC16, putative Neighboring gene conserved protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037282.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum. Bunnik EM, et al. Genome Biol, 2016 Jul 5. PMID 27381095, Free PMC Article
    2. A network-based approach reveals novel invasion and Maurer's clefts-related proteins in Plasmodium falciparum. Das D, et al. Mol Omics, 2019 Dec 2. PMID 31631203
    3. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    4. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables mRNA binding HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within alternative mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Maurer's cleft RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    alternative splicing factor ASF-1, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037282.1 Reference assembly

      Range
      746854..747456 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347840.1 → XP_001347876.1  alternative splicing factor ASF-1, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347876.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024UXK1, A0A024VPM5, A0A024W618, A0A024WNI1, A0A024X761, A0A0L7K9T5, Q8IIG9, W4IFY6, W4IU02, W7FK01, W7G4N1, W7JM08, W7JSP7
      Conserved Domains (2) summary
      TIGR01628
      Location:11 → 168
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd00590
      Location:11 → 82
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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