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    PF3D7_1355800 splicing factor 3B subunit 5, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 814259, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1355800
    Gene description
    splicing factor 3B subunit 5, putative
    Locus tag
    PF3D7_1355800
    See related
    PlasmoDB:PF3D7_1355800; VEuPathDB:PF3D7_1355800
    Gene type
    protein coding
    RNA name
    splicing factor 3B subunit 5, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1355800 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    4
    Sequence:
    Chromosome: 13; NC_004331.3 (2214445..2215085)

    Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene PhIL1 interacting protein PIP1 Neighboring gene NLI interacting factor-like phosphatase, putative Neighboring gene RWD domain-containing protein, putative Neighboring gene conserved Plasmodium protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004331.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within spliceosomal complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of U2 snRNP ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    splicing factor 3B subunit 5, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004331.3 Reference assembly

      Range
      2214445..2215085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002809036.1 → XP_002809082.1  splicing factor 3B subunit 5, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_002809082.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V0R5, A0A024W2X0, A0A024WKX4, A0A024X2C2, C0H5I5, W4IBF8, W7F279, W7FCM6, W7JS29, W7K0L5
      Conserved Domains (1) summary
      pfam07189
      Location:5 → 77
      SF3b10; Splicing factor 3B subunit 10 (SF3b10)
    Nucleotide Protein
    Heading Accession and Version

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