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    PF3D7_1406600 ATP-dependent Clp protease regulatory subunit ClpC [ Plasmodium falciparum 3D7 ]

    Gene ID: 811645, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1406600
    Gene description
    ATP-dependent Clp protease regulatory subunit ClpC
    Locus tag
    PF3D7_1406600
    See related
    PlasmoDB:PF3D7_1406600; VEuPathDB:PF3D7_1406600
    Gene type
    protein coding
    RNA name
    ATP-dependent Clp protease regulatory subunit ClpC
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1406600 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    1
    Sequence:
    Chromosome: 14; NC_037283.1 (239747..243772)

    Chromosome 14 - NC_037283.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat domain-containing protein, putative Neighboring gene WD repeat-containing protein 65, putative Neighboring gene vacuolar protein sorting-associated protein 29 Neighboring gene glideosome associated protein with multiple membrane spans 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037283.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PfClpC Is an Essential Clp Chaperone Required for Plastid Integrity and Clp Protease Stability in Plasmodium falciparum. Florentin A, et al. Cell Rep, 2017 Nov 14. PMID 29141210, Free PMC Article
    2. The Clp chaperones and proteases of the human malaria parasite Plasmodium falciparum. El Bakkouri M, et al. J Mol Biol, 2010 Dec 3. PMID 20887733
    3. Plastid biogenesis in malaria parasites requires the interactions and catalytic activity of the Clp proteolytic system. Florentin A, et al. Proc Natl Acad Sci U S A, 2020 Jun 16. PMID 32482878, Free PMC Article
    4. Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites. Boucher MJ, et al. PLoS Biol, 2018 Sep. PMID 30212465, Free PMC Article
    5. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apicoplast HDA PubMed 
    located_in apicoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of endopeptidase Clp complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent Clp protease regulatory subunit ClpC
    XP_001348236.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037283.1 Reference assembly

      Range
      239747..243772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001348200.1 → XP_001348236.1  ATP-dependent Clp protease regulatory subunit ClpC [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001348236.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024WK95, A0A0L7K5Q7, Q8IM28, W7FL68, W7K8S3
      Conserved Domains (1) summary
      COG0542
      Location:337 → 1325
      ClpA; ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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