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    LINC02199 long intergenic non-protein coding RNA 2199 [ Homo sapiens (human) ]

    Gene ID: 101929284, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02199provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2199provided by HGNC
    Primary source
    HGNC:HGNC:53065
    See related
    Ensembl:ENSG00000250198 AllianceGenome:HGNC:53065
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02199 in Genome Data Viewer
    Location:
    5p15.31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (8839732..8881525)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (8779655..8821452)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (8839844..8881637)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr5:8627353-8627526 Neighboring gene MT-CYB pseudogene 37 Neighboring gene MT-ND6 pseudogene 2 Neighboring gene uncharacterized LOC101929307 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:8828894-8830093 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:9013731-9014930 Neighboring gene semaphorin 5A Neighboring gene microRNA 4636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:9122300-9122841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22348 Neighboring gene uncharacterized LOC124901170

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109932.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091895, AC091937
      Related
      ENST00000510229.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      8839732..8881525
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      8779655..8821452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)