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    SYNPR-AS1 SYNPR antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100874016, updated on 10-Dec-2024

    Summary

    Official Symbol
    SYNPR-AS1provided by HGNC
    Official Full Name
    SYNPR antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40774
    See related
    Ensembl:ENSG00000241359 AllianceGenome:HGNC:40774
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LncFASA
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See SYNPR-AS1 in Genome Data Viewer
    Location:
    3p14.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (63423596..63550051, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (63467182..63593668, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (63409272..63535727, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 698 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:63121623-63122228 Neighboring gene NANOG hESC enhancer GRCh37_chr3:63152724-63153255 Neighboring gene ubiquitin like 5 pseudogene 3 Neighboring gene synaptoporin Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:63329277-63329919 Neighboring gene NANOG hESC enhancer GRCh37_chr3:63429870-63430414 Neighboring gene RNA, 5S ribosomal pseudogene 134 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:63562463-63562990 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:63631069-63631622 Neighboring gene NANOG hESC enhancer GRCh37_chr3:63637673-63638197 Neighboring gene VISTA enhancer hs1387 Neighboring gene uncharacterized LOC105377119 Neighboring gene sentan, cilia apical structure protein

    Genomic regions, transcripts, and products

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations.
    EBI GWAS Catalog

    General gene information

    Other Names

    • SYNPR antisense RNA 1 (non-protein coding)
    • lncRNA Ferroptosis-Associated SYNPR-AS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046677.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC099056, AC104436
      Related
      ENST00000488201.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      63423596..63550051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      63467182..63593668 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)