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    Chct1 CHD1 helical C-terminal domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 73634, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Chct1provided by MGI
    Official Full Name
    CHD1 helical C-terminal domain containing 1provided by MGI
    Primary source
    MGI:MGI:1920884
    See related
    Ensembl:ENSMUSG00000018479 AllianceGenome:MGI:1920884
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700125H20Rik
    Summary
    Predicted to be located in cytoplasm. Is expressed in testis. Orthologous to human CHCT1 (CHD1 helical C-terminal domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 2.2) and adrenal adult (RPKM 0.2) See more
    Orthologs
    human all
    NEW
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    Genomic context

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    See Chct1 in Genome Data Viewer
    Location:
    11 C; 11 51.34 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (85031023..85072042)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (85140173..85181154)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 32 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene ribosomal protein L13, pseudogene 1 Neighboring gene ribosomal protein L13 pseudogene Neighboring gene STARR-seq mESC enhancer starr_30233 Neighboring gene STARR-positive B cell enhancer ABC_E7034 Neighboring gene STARR-seq mESC enhancer starr_30234 Neighboring gene predicted gene, 23506 Neighboring gene amyloid beta precursor protein binding protein 2 Neighboring gene predicted gene, 51947 Neighboring gene predicted gene, 38935

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Expression profile analysis of a new testis-specifically expressed gene C17ORF64 and its association with cell apoptosis in MCF-7 cells. Dai Y, et al. Mol Biol Rep, 2021 Feb. PMID 33566224
    2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    4. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    5. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Expression profile analysis of a new testis-specifically expressed gene C17ORF64 and its association with cell apoptosis in MCF-7 cells.
      Title: Expression profile analysis of a new testis-specifically expressed gene C17ORF64 and its association with cell apoptosis in MCF-7 cells.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    CHD1 helical C-terminal domain containing protein 1
    Names
    uncharacterized protein C17orf64 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028589.1 → NP_082865.1  CHD1 helical C-terminal domain containing protein 1

      See identical proteins and their annotated locations for NP_082865.1

      Status: VALIDATED

      Source sequence(s)
      BB019433, BC048674
      Consensus CDS
      CCDS48872.1
      UniProtKB/Swiss-Prot
      Q5SX10, Q80ZN8, Q9D979
      Related
      ENSMUSP00000018623.4, ENSMUST00000018623.4
      Conserved Domains (1) summary
      pfam13907
      Location:50 → 132
      DUF4208; Domain of unknown function (DUF4208)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      85031023..85072042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246376.2 → XP_030102236.1  CHD1 helical C-terminal domain containing protein 1 isoform X7

    2. XM_036157025.1 → XP_036012918.1  CHD1 helical C-terminal domain containing protein 1 isoform X7

    3. XM_011249281.4 → XP_011247583.1  CHD1 helical C-terminal domain containing protein 1 isoform X6

      See identical proteins and their annotated locations for XP_011247583.1

      Conserved Domains (1) summary
      pfam13907
      Location:45 → 126
      DUF4208; Domain of unknown function (DUF4208)

    4. XM_006534344.5 → XP_006534407.1  CHD1 helical C-terminal domain containing protein 1 isoform X7

      See identical proteins and their annotated locations for XP_006534407.1

      UniProtKB/Swiss-Prot
      Q9D979
      Related
      ENSMUSP00000098248.2, ENSMUST00000100681.8

    5. XM_006534339.5 → XP_006534402.1  CHD1 helical C-terminal domain containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam13907
      Location:81 → 162
      DUF4208; Domain of unknown function (DUF4208)

    6. XM_006534340.5 → XP_006534403.1  CHD1 helical C-terminal domain containing protein 1 isoform X2

      Conserved Domains (1) summary
      pfam13907
      Location:71 → 153
      DUF4208; Domain of unknown function (DUF4208)

    7. XM_006534341.5 → XP_006534404.1  CHD1 helical C-terminal domain containing protein 1 isoform X3

      Conserved Domains (1) summary
      pfam13907
      Location:81 → 162
      DUF4208; Domain of unknown function (DUF4208)

    8. XM_006534342.5 → XP_006534405.1  CHD1 helical C-terminal domain containing protein 1 isoform X4

      Conserved Domains (1) summary
      pfam13907
      Location:60 → 141
      DUF4208; Domain of unknown function (DUF4208)

    9. XM_030246375.2 → XP_030102235.1  CHD1 helical C-terminal domain containing protein 1 isoform X5

      Conserved Domains (1) summary
      pfam13907
      Location:50 → 132
      DUF4208; Domain of unknown function (DUF4208)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D979.3 GenPept UniProtKB/Swiss-Prot:Q9D979

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