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    Kirrel3os kirre like nephrin family adhesion molecule 3, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 442804, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Kirrel3osprovided by MGI
    Official Full Name
    kirre like nephrin family adhesion molecule 3, opposite strandprovided by MGI
    Primary source
    MGI:MGI:3045250
    See related
    AllianceGenome:MGI:3045250
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A130066N16Rik
    Summary
    Is expressed in embryo. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in genital fat pad adult (RPKM 1.5), cerebellum adult (RPKM 0.5) and 7 other tissues See more
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    Genomic context

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    See Kirrel3os in Genome Data Viewer
    Location:
    9 A4; 9 18.97 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (34771397..34918991, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (34918230..35007695, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene kirre like nephrin family adhesion molecule 3 Neighboring gene predicted gene, 33777 Neighboring gene predicted gene, 33561 Neighboring gene STARR-positive B cell enhancer ABC_E3822 Neighboring gene STARR-seq mESC enhancer starr_23759 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene predicted gene, 51705 Neighboring gene RIKEN cDNA 4930581F22 gene Neighboring gene STARR-seq mESC enhancer starr_23763 Neighboring gene predicted gene, 57537

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Other Names

    • Kirrel3 opposite strand transcript
    • kin of IRRE like 3, opposite strand

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      34771397..34918991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003948308.2 RNA Sequence

    2. XR_003948307.2 RNA Sequence

    3. XR_003948304.1 RNA Sequence

    4. XR_003948306.2 RNA Sequence

    5. XR_003948309.1 RNA Sequence

    6. XR_003948310.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001002772.1: Suppressed sequence

      Description
      NM_001002772.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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