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    LINC02370 long intergenic non-protein coding RNA 2370 [ Homo sapiens (human) ]

    Gene ID: 338797, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02370provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2370provided by HGNC
    Primary source
    HGNC:HGNC:27885
    See related
    AllianceGenome:HGNC:27885
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02370 in Genome Data Viewer
    Location:
    12q24.33
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (131347470..131367555)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (131389348..131409390)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (131832015..131852100)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 376 Neighboring gene uncharacterized LOC124903055 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131795285-131796186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131796187-131797088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131797991-131798890 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5096 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131817976-131818300 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:131825059-131825632 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:131825633-131826208 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131830309-131830533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131831075-131831712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131832905-131833449 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131865091-131865672 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131876192-131876341 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131885230-131885407 Neighboring gene vegetative cell wall protein gp1-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131914223-131914746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131917517-131918230 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131925817-131926316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7361 Neighboring gene uncharacterized LOC101929974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131939217-131939722 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7363 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132012597-132013096

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium. Morrison AC, et al. Circ Cardiovasc Genet, 2010 Jun. PMID 20400778, Free PMC Article
    2. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103736.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092850, AC140118

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      131347470..131367555
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      131389348..131409390
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001025466.1: Suppressed sequence

      Description
      NM_001025466.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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