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    GOLGA2P11 GOLGA2 pseudogene 11 [ Homo sapiens (human) ]

    Gene ID: 255180, updated on 17-Sep-2024

    Summary

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    Official Symbol
    GOLGA2P11provided by HGNC
    Official Full Name
    GOLGA2 pseudogene 11provided by HGNC
    Primary source
    HGNC:HGNC:26788
    See related
    AllianceGenome:HGNC:26788
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.3), fat (RPKM 0.5) and 1 other tissue See more
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    Genomic context

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    See GOLGA2P11 in Genome Data Viewer
    Location:
    15q22.2
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (62241721..62257703, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (60045733..60061720, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (62533920..62549902, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:62457535-62458134 Neighboring gene uncharacterized LOC124903502 Neighboring gene uncharacterized LOC107984784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62534714-62535214 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62535215-62535715 Neighboring gene Sharpr-MPRA regulatory region 15238 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:62554405-62555604 Neighboring gene uncharacterized LOC102724938 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:62587380-62587893 Neighboring gene Sharpr-MPRA regulatory region 8292 Neighboring gene microRNA 8067

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • golgin A2 pseudogene 11

    Clone Names

    • FLJ38723

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136885.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126323

    2. NR_169521.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126323

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      62241721..62257703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      60045733..60061720 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_173805.2: Suppressed sequence

      Description
      NM_173805.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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