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    ydjH L-glycero-L-galacto-octuluronate kinase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946285, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydjH
    Official Full Name
    L-glycero-L-galacto-octuluronate kinase
    Primary source
    ECOCYC:G6959
    Locus tag
    b1772
    See related
    ASAP:ABE-0005903
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1770
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    Genomic context

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    Sequence:
    NC_000913.3 (1855981..1856928, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YdjF Neighboring gene NADH-dependent methylglyoxal reductase Neighboring gene L-glycero-L-galacto-octuluronate-1-phosphate aldolase Neighboring gene putative zinc-binding dehydrogenase YdjJ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Characterization of YdjH, a Sugar Kinase of Unknown Specificity in Escherichia coli K12. Huddleston JP, et al. Biochemistry, 2019 Aug 6. PMID 31314509, Free PMC Article
    2. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 2-dehydro-3-deoxygluconokinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables carbohydrate kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in D-galacturonate catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in D-glucuronate catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA damage response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in carbohydrate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in phosphate-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    L-glycero-L-galacto-octuluronate kinase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1855981..1856928 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416286.4 L-glycero-L-galacto-octuluronate kinase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416286.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2GIU3
      Conserved Domains (1) summary
      cd01166
      Location:5 → 297
      KdgK; 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the ...
    Nucleotide Protein
    Heading Accession and Version

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