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    ykgO 50S ribosomal subunit protein L36B [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 1450238, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ykgO
    Official Full Name
    50S ribosomal subunit protein L36B
    Primary source
    ECOCYC:G0-10434
    Locus tag
    b4506
    See related
    ASAP:ABE-0285027
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0295
    Summary
    YkgO is homologous to ribosomal protein L36. [More information is available at EcoGene: EG14432].
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    Genomic context

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    Sequence:
    NC_000913.3 (312374..312514, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator MatA Neighboring gene uncharacterized protein YkgL Neighboring gene 50S ribosomal subunit protein L31B Neighboring gene putative membrane protein YkgR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase. Lilleorg S, et al. Biochimie, 2019 Jan. PMID 30359641
    2. Global approaches for finding small RNA and small open reading frame functions. Wassarman KM, et al. J Bacteriol, 2010 Jan. PMID 19854892, Free PMC Article
    3. Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies. Hemm MR, et al. J Bacteriol, 2010 Jan. PMID 19734316, Free PMC Article
    4. Small membrane proteins found by comparative genomics and ribosome binding site models. Hemm MR, et al. Mol Microbiol, 2008 Dec. PMID 19121005, Free PMC Article
    5. YkgM and YkgO maintain translation by replacing their paralogs, zinc-binding ribosomal proteins L31 and L36, with identical activities. Ueta M, et al. Genes Cells, 2020 Aug. PMID 32559334

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    50S ribosomal subunit protein L36B

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      312374..312514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_588437.1 50S ribosomal subunit protein L36B [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_588437.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A192CIS7, A0A828U9V7, A0AA36KUN8, D7RNR8
      Conserved Domains (1) summary
      PRK00831
      Location:1 → 41
      rpmJ; 50S ribosomal protein L36; Validated
    Nucleotide Protein
    Heading Accession and Version

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