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    yfdR 5'-deoxynucleotidase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946834, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yfdR
    Official Full Name
    5'-deoxynucleotidase
    Primary source
    ECOCYC:G7230
    Locus tag
    b2361
    See related
    ASAP:ABE-0007791
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2355
    Summary
    YfdR is a deoxyribonucleoside 5'-monophosphate phosphatase with a conserved HD domain. [More information is available at EcoCyc: G7230].
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    Genomic context

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    Sequence:
    NC_000913.3 (2474984..2475520)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YfdP Neighboring gene DUF2303 domain-containing protein YfdQ Neighboring gene protein YfdS Neighboring gene protein YfdT Neighboring gene putative uncharacterized protein YpdJ Neighboring gene prophage CPS-53 recombination directionality factor and response regulator inhibitor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Escherichia coli Cryptic Prophage Protein YfdR Binds to DnaA and Initiation of Chromosomal Replication Is Inhibited by Overexpression of the Gene Cluster yfdQ-yfdR-yfdS-yfdT. Noguchi Y, et al. Front Microbiol, 2016. PMID 26973617, Free PMC Article
    2. Control and regulation of KplE1 prophage site-specific recombination: a new recombination module analyzed. Panis G, et al. J Biol Chem, 2007 Jul 27. PMID 17545146
    3. Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli. Zimmerman MD, et al. J Mol Biol, 2008 Apr 18. PMID 18353368, Free PMC Article
    4. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    5. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 5'-deoxynucleotidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cobalt ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5'-deoxynucleotidase
    NP_416862.2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2474984..2475520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416862.2 5'-deoxynucleotidase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416862.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376CR64
      Conserved Domains (1) summary
      COG1896
      Location:1 → 177
      YfbR; 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases [Nucleotide transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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