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    Spmap2l sperm microtubule associated protein 2 like [ Mus musculus (house mouse) ]

    Gene ID: 71868, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Spmap2lprovided by MGI
    Official Full Name
    sperm microtubule associated protein 2 likeprovided by MGI
    Primary source
    MGI:MGI:1919118
    See related
    Ensembl:ENSMUSG00000029248 AllianceGenome:MGI:1919118
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Thegl; 1700023E05Rik
    Summary
    Is expressed in ductus deferens and testis. Orthologous to human SPMAP2L (sperm microtubule associated protein 2 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 43.7) See more
    Orthologs
    human all
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    Genomic context

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    See Spmap2l in Genome Data Viewer
    Location:
    5 C3.3; 5 41.45 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (77163879..77209382)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (77016023..77061541)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase Neighboring gene predicted gene, 54291 Neighboring gene signal recognition particle 72 Neighboring gene RIKEN cDNA 1700112J05 gene Neighboring gene ADP-ribosylation factor-like 9 Neighboring gene STARR-seq mESC enhancer starr_13457 Neighboring gene microRNA 12199 Neighboring gene predicted gene, 57746 Neighboring gene HOP homeobox

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    2. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    4. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    sperm microtubule associated protein 2-like
    Names
    theg spermatid protein like
    theg spermatid-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417738.1 → NP_001404667.1  sperm microtubule associated protein 2-like isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC165975

    2. NM_001417739.1 → NP_001404668.1  sperm microtubule associated protein 2-like isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC114666, AC165975

    3. NM_001417740.1 → NP_001404669.1  sperm microtubule associated protein 2-like isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC165975
      UniProtKB/TrEMBL
      D3YU57
      Related
      ENSMUSP00000112660.2, ENSMUST00000118941.2

    4. NM_027970.2 → NP_082246.1  sperm microtubule associated protein 2-like isoform 1

      See identical proteins and their annotated locations for NP_082246.1

      Status: VALIDATED

      Source sequence(s)
      AC114666, AC165975
      Consensus CDS
      CCDS19369.1
      UniProtKB/Swiss-Prot
      Q9DA15
      Related
      ENSMUSP00000031161.5, ENSMUST00000031161.11
      Conserved Domains (1) summary
      pfam14912
      Location:208 → 275
      THEG; Testicular haploid expressed repeat

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      77163879..77209382
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DA15.1 GenPept UniProtKB/Swiss-Prot:Q9DA15

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