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    Fam163b family with sequence similarity 163, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685169, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fam163bprovided by RGD
    Official Full Name
    family with sequence similarity 163, member Bprovided by RGD
    Primary source
    RGD:1597714
    See related
    AllianceGenome:RGD:1597714
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human FAM163B (family with sequence similarity 163 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 68.3), Heart (RPKM 9.3) and 2 other tissues See more
    Orthologs
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    Genomic context

    See Fam163b in Genome Data Viewer
    Location:
    3p12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (30834145..30865802, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (10437383..10466458, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (5656400..5693273, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene myomaker, myoblast fusion factor Neighboring gene ADAMTS-like 2 Neighboring gene uncharacterized LOC134486349 Neighboring gene dopamine beta-hydroxylase

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109458.1NP_001102928.1  protein FAM163B

      See identical proteins and their annotated locations for NP_001102928.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474001
      UniProtKB/TrEMBL
      A6JTK5, D3Z988
      Conserved Domains (1) summary
      pfam15069
      Location:1166
      FAM163; FAM163 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      30834145..30865802 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284556.1XP_063140626.1  protein FAM163B isoform X1

      UniProtKB/TrEMBL
      A6JTK5, D3Z988