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    Zfp980 zinc finger protein 980 [ Mus musculus (house mouse) ]

    Gene ID: 100041379, updated on 9-Dec-2024

    Summary

    Official Symbol
    Zfp980provided by MGI
    Official Full Name
    zinc finger protein 980provided by MGI
    Primary source
    MGI:MGI:3712454
    See related
    Ensembl:ENSMUSG00000058186 AllianceGenome:MGI:3712454
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm13242
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be active in nucleus. Is expressed in epiblast; primitive endoderm; and trophectoderm. Orthologous to human ZNF616 (zinc finger protein 616). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Zfp980 in Genome Data Viewer
    Location:
    4 E1; 4 78.23 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (145397267..145431007)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (145670697..145704437)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:145243801-145244102 Neighboring gene predicted gene 13249 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145254570-145254871 Neighboring gene STARR-seq mESC enhancer starr_12035 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145269028-145269328 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145271302-145271602 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145274293-145274594 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145275073-145275374 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145276526-145276827 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145276879-145277180 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145277691-145277992 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145278790-145279091 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145281441-145281742 Neighboring gene high mobility group box 3 pseudogene Neighboring gene vomeronasal 2, receptor, pseudogene 15 Neighboring gene predicted gene, 26763 Neighboring gene predicted gene 13232

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC106319

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within hematopoietic progenitor cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC100041379

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103158.2NP_001096628.2  uncharacterized protein LOC100041379

      Status: VALIDATED

      Source sequence(s)
      BC096593, CD539619
      Consensus CDS
      CCDS51370.1
      UniProtKB/TrEMBL
      A2A9J5
      Related
      ENSMUSP00000101364.3, ENSMUST00000105738.9
      Conserved Domains (5) summary
      smart00349
      Location:2870
      KRAB; krueppel associated box
      COG5048
      Location:96510
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:253273
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:2867
      KRAB; KRAB box
      pfam13465
      Location:602626
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      145397267..145431007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)