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    BC051019 cDNA sequence BC051019 [ Mus musculus (house mouse) ]

    Gene ID: 57355, updated on 27-Nov-2024

    Summary

    Official Symbol
    BC051019provided by MGI
    Official Full Name
    cDNA sequence BC051019provided by MGI
    Primary source
    MGI:MGI:1928824
    See related
    Ensembl:ENSMUSG00000031022 AllianceGenome:MGI:1928824
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D7H11orf16; ICRFP703B1614Q5.5
    Summary
    Orthologous to human C11orf16 (chromosome 11 open reading frame 16). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in lung adult (RPKM 6.9), bladder adult (RPKM 5.4) and 2 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See BC051019 in Genome Data Viewer
    Location:
    7 E3; 7 57.45 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (109311388..109323141, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (109712181..109723934, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24888 Neighboring gene ribosomal protein L27A Neighboring gene DENN domain containing 2B Neighboring gene STARR-seq mESC enhancer starr_19802 Neighboring gene STARR-seq mESC enhancer starr_19804 Neighboring gene STARR-positive B cell enhancer ABC_E4965 Neighboring gene VISTA enhancer mm1407 Neighboring gene A kinase interacting protein 1 Neighboring gene predicted gene, 51493 Neighboring gene achaete-scute family bHLH transcription factor 3 Neighboring gene TMEM9 domain family, member B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C11orf16 homolog
    Names
    ICRFP703N2430Q5.5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040700.2NP_001035790.1  uncharacterized protein C11orf16 homolog

      See identical proteins and their annotated locations for NP_001035790.1

      Status: PROVISIONAL

      Source sequence(s)
      BC051019
      Consensus CDS
      CCDS40084.1
      UniProtKB/Swiss-Prot
      Q80XE7, Q9JJR6
      UniProtKB/TrEMBL
      Q3UQ01
      Related
      ENSMUSP00000102346.3, ENSMUST00000106735.9
      Conserved Domains (1) summary
      pfam15057
      Location:85223
      DUF4537; Domain of unknown function (DUF4537)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      109311388..109323141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508052.4XP_006508115.1  uncharacterized protein C11orf16 homolog isoform X1

      See identical proteins and their annotated locations for XP_006508115.1

      UniProtKB/Swiss-Prot
      Q80XE7, Q9JJR6
      UniProtKB/TrEMBL
      Q3UQ01
      Related
      ENSMUSP00000033334.5, ENSMUST00000033334.5
      Conserved Domains (1) summary
      pfam15057
      Location:85223
      DUF4537; Domain of unknown function (DUF4537)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_020609.2: Suppressed sequence

      Description
      NM_020609.2: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.