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    Bach2os BTB and CNC homology 2, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 414068, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Bach2osprovided by MGI
    Official Full Name
    BTB and CNC homology 2, opposite strandprovided by MGI
    Primary source
    MGI:MGI:3041246
    See related
    Ensembl:ENSMUSG00000086150 AllianceGenome:MGI:3041246
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in ureter and urinary system. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in spleen adult (RPKM 3.8), whole brain E14.5 (RPKM 1.8) and 27 other tissues See more
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    Genomic context

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    See Bach2os in Genome Data Viewer
    Location:
    4 A5; 4 14.22 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (32559680..32571662, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (32559680..32571662, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E4615 Neighboring gene STARR-positive B cell enhancer ABC_E7959 Neighboring gene nuclear encoded tRNA glycine 3 (anticodon CCC) Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:32345161-32345344 Neighboring gene BTB and CNC homology, basic leucine zipper transcription factor 2 Neighboring gene VISTA enhancer mm720 Neighboring gene STARR-positive B cell enhancer ABC_E7960 Neighboring gene STARR-positive B cell enhancer ABC_E11713 Neighboring gene STARR-positive B cell enhancer ABC_E6157 Neighboring gene STARR-positive B cell enhancer ABC_E1639 Neighboring gene STARR-positive B cell enhancer mm9_chr4:32478184-32478485 Neighboring gene STARR-seq mESC enhancer starr_09864 Neighboring gene VISTA enhancer mm510 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:32647355-32647538 Neighboring gene STARR-seq mESC enhancer starr_09865 Neighboring gene STARR-positive B cell enhancer ABC_E6158 Neighboring gene STARR-seq mESC enhancer starr_09866 Neighboring gene gap junction protein, alpha 10 Neighboring gene caspase 8 associated protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Comparison of exon 5 sequences from 35 class I genes of the BALB/c mouse. Brorson KA, et al. J Exp Med, 1989 Dec 1. PMID 2584927, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Other Names

    • Bach2 opposite strand transcript

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026843.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL831746
      Related
      ENSMUST00000126225.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      32559680..32571662 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033486.1: Suppressed sequence

      Description
      NM_001033486.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

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