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    A530040E14Rik RIKEN cDNA A530040E14 gene [ Mus musculus (house mouse) ]

    Gene ID: 621875, updated on 22-Oct-2024

    Summary

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    Official Symbol
    A530040E14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A530040E14 geneprovided by MGI
    Primary source
    MGI:MGI:3612703
    See related
    Ensembl:ENSMUSG00000072109 AllianceGenome:MGI:3612703
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in thymus adult (RPKM 4.5), spleen adult (RPKM 3.8) and 14 other tissues See more
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    Genomic context

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    See A530040E14Rik in Genome Data Viewer
    Location:
    1 C5; 1 43.45 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85083814..85091759)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85106093..85114038)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene Sp140 nuclear body protein pseudogene Neighboring gene Sp140 nuclear body protein pseudogene Neighboring gene Sp140 nuclear body protein like 1 Neighboring gene STARR-seq mESC enhancer starr_01538 Neighboring gene STARR-seq mESC enhancer starr_01539 Neighboring gene Sp140 nuclear body protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_01540 Neighboring gene STARR-seq mESC enhancer starr_01541 Neighboring gene predicted gene, 38510 Neighboring gene predicted gene, 53253 Neighboring gene STARR-seq mESC enhancer starr_01543 Neighboring gene STARR-positive B cell enhancer mm9_chr1:85203253-85203554 Neighboring gene predicted gene, 53568 Neighboring gene predicted pseudogene 7609

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Clone Names

    • AC167036.4

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_163968.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC167036
      Related
      ENSMUST00000162353.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      85083814..85091759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001037910.1: Suppressed sequence

      Description
      NM_001037910.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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