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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001145923.2 → NP_001139395.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is shorter than isoform a.
- Source sequence(s)
-
AC016343, AC027243, AF119814, BX647285
- Consensus CDS
-
CCDS53961.1
- UniProtKB/Swiss-Prot
-
Q9BY12
- Related
- ENSP00000442190.2, ENST00000538941.6
- Conserved Domains (2) summary
-
- PTZ00121
Location:146 → 524
- PTZ00121; MAEBL; Provisional
- smart00451
Location:544 → 576
- ZnF_U1; U1-like zinc finger
-
NM_001353009.2 → NP_001339938.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform c
Status: VALIDATED
- Source sequence(s)
-
AC015798, AC016343, AC027243, AC051643, AC090179, AC090751
- Conserved Domains (3) summary
-
- smart00451
Location:796 → 828
- ZnF_U1; U1-like zinc finger
- pfam16501
Location:89 → 183
- SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
- cl26511
Location:395 → 776
- Neuromodulin_N; Gap junction protein N-terminal region
-
NM_001353010.2 → NP_001339939.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform d
Status: VALIDATED
- Source sequence(s)
-
AC015798, AC016343, AC027243, AC051643, AC090179, AC090751
- Conserved Domains (3) summary
-
- smart00451
Location:656 → 688
- ZnF_U1; U1-like zinc finger
- pfam16501
Location:1 → 49
- SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
- cl26511
Location:258 → 636
- Neuromodulin_N; Gap junction protein N-terminal region
-
NM_001353011.2 → NP_001339940.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform e
Status: VALIDATED
- Source sequence(s)
-
AC015798, AC016343, AC027243, AC051643, AC090179, AC090751
- Conserved Domains (3) summary
-
- smart00451
Location:662 → 694
- ZnF_U1; U1-like zinc finger
- pfam16501
Location:1 → 49
- SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
- cl26511
Location:261 → 642
- Neuromodulin_N; Gap junction protein N-terminal region
-
NM_001353012.2 → NP_001339941.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform d
Status: VALIDATED
- Source sequence(s)
-
AC015798, AC016343, AC027243, AC051643, AC090179, AC090751
- Conserved Domains (3) summary
-
- smart00451
Location:656 → 688
- ZnF_U1; U1-like zinc finger
- pfam16501
Location:1 → 49
- SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
- cl26511
Location:258 → 636
- Neuromodulin_N; Gap junction protein N-terminal region
-
NM_020843.4 → NP_065894.2 S phase cyclin A-associated protein in the endoplasmic reticulum isoform a
See identical proteins and their annotated locations for NP_065894.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes isoform a.
- Source sequence(s)
-
AC015798, AC016343, AC027243, AC051643, AC090179, AC090751
- Consensus CDS
-
CCDS53962.1
- UniProtKB/Swiss-Prot
- F5H7X8, H3BNR7, Q3B7X7, Q96BS9, Q9BY12, Q9H3D8, Q9NT03, Q9P274
- Related
- ENSP00000454973.1, ENST00000563290.6
- Conserved Domains (5) summary
-
- smart00451
Location:790 → 822
- ZnF_U1; U1-like zinc finger
- pfam00836
Location:529 → 626
- Stathmin; Stathmin family
- pfam16501
Location:89 → 183
- SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
- cd16269
Location:760 → 770
- GBP_C; coiled coil [structural motif]
- cl20817
Location:670 → 774
- GBP_C; Guanylate-binding protein, C-terminal domain
RNA
-
NR_148227.2 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC015798, AC016343, AC027243, AC051643, AC090179, AC090751
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000015.10 Reference GRCh38.p14 Primary Assembly
- Range
-
76347904..76905340 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017022273.2 → XP_016877762.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X9
- Conserved Domains (3) summary
-
- smart00451
Location:656 → 688
- ZnF_U1; U1-like zinc finger
- pfam16501
Location:1 → 49
- SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
- cl26511
Location:258 → 636
- Neuromodulin_N; Gap junction protein N-terminal region
-
XM_011521653.4 → XP_011519955.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X8
See identical proteins and their annotated locations for XP_011519955.1
- Conserved Domains (3) summary
-
- smart00451
Location:662 → 694
- ZnF_U1; U1-like zinc finger
- pfam16501
Location:1 → 49
- SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
- cl26511
Location:261 → 642
- Neuromodulin_N; Gap junction protein N-terminal region
-
XM_047432625.1 → XP_047288581.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X6
-
XM_047432621.1 → XP_047288577.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X2
-
XM_047432624.1 → XP_047288580.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X5
-
XM_047432620.1 → XP_047288576.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1
-
XM_047432623.1 → XP_047288579.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X4
-
XM_047432622.1 → XP_047288578.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X3
-
XM_047432626.1 → XP_047288582.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X7
-
XM_047432627.1 → XP_047288583.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X10
-
XM_011521656.4 → XP_011519958.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X20
- Conserved Domains (5) summary
-
- smart00451
Location:176 → 208
- ZnF_U1; U1-like zinc finger
- pfam11600
Location:28 → 182
- CAF-1_p150; Chromatin assembly factor 1 complex p150 subunit, N-terminal
- cd16269
Location:146 → 156
- GBP_C; coiled coil [structural motif]
- cl00220
Location:543 → 584
- cysteine_hydrolases; Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It ...
- cl20817
Location:56 → 160
- GBP_C; Guanylate-binding protein, C-terminal domain
-
XM_047432633.1 → XP_047288589.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X22
-
XM_047432629.1 → XP_047288585.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X15
-
XM_047432628.1 → XP_047288584.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X14
-
XM_024449942.2 → XP_024305710.2 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X13
-
XM_024449941.2 → XP_024305709.2 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X12
-
XM_024449940.2 → XP_024305708.2 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X11
-
XM_047432630.1 → XP_047288586.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X16
-
XM_047432632.1 → XP_047288588.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X21
- UniProtKB/TrEMBL
-
H3BS25
-
XM_047432631.1 → XP_047288587.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X18
- UniProtKB/TrEMBL
-
H3BS25
-
XM_024449944.2 → XP_024305712.2 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X17
- UniProtKB/TrEMBL
-
H3BS25
-
XM_017022283.2 → XP_016877772.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X19
- UniProtKB/TrEMBL
-
H3BS25
- Related
- ENSP00000456508.1, ENST00000564590.5
-
XM_047432634.1 → XP_047288590.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X23
RNA
-
XR_007064448.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060939.1 Alternate T2T-CHM13v2.0
- Range
-
74219067..74764374 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054378112.1 → XP_054234087.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X9
-
XM_054378111.1 → XP_054234086.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X8
-
XM_054378109.1 → XP_054234084.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X6
-
XM_054378105.1 → XP_054234080.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X2
-
XM_054378108.1 → XP_054234083.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X5
-
XM_054378104.1 → XP_054234079.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1
-
XM_054378107.1 → XP_054234082.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X4
-
XM_054378106.1 → XP_054234081.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X3
-
XM_054378110.1 → XP_054234085.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X7
-
XM_054378113.1 → XP_054234088.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X10
-
XM_054378123.1 → XP_054234098.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X20
-
XM_054378125.1 → XP_054234100.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X22
-
XM_054378118.1 → XP_054234093.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X15
-
XM_054378116.1 → XP_054234091.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X13
-
XM_054378115.1 → XP_054234090.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X12
-
XM_054378117.1 → XP_054234092.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X14
-
XM_054378114.1 → XP_054234089.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X11
-
XM_054378119.1 → XP_054234094.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X16
-
XM_054378124.1 → XP_054234099.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X21
- UniProtKB/TrEMBL
-
H3BS25
-
XM_054378121.1 → XP_054234096.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X18
- UniProtKB/TrEMBL
-
H3BS25
-
XM_054378120.1 → XP_054234095.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X17
- UniProtKB/TrEMBL
-
H3BS25
-
XM_054378122.1 → XP_054234097.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X19
- UniProtKB/TrEMBL
-
H3BS25
-
XM_054378126.1 → XP_054234101.1 S phase cyclin A-associated protein in the endoplasmic reticulum isoform X23