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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_012547.1 RefSeqGene
- Range
-
4811..155945
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001039590.3 → NP_001034679.2 ubiquitin carboxyl-terminal hydrolase 9X isoform 3
See identical proteins and their annotated locations for NP_001034679.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longer transcript and encodes the longer isoform (3).
- Source sequence(s)
-
AA261797, AF070645, AL109797, AL391259, AW183065, BC063645, BE925861, BX956755, CD619095, DA854185, X98296
- Consensus CDS
-
CCDS43930.1
- UniProtKB/TrEMBL
-
A0A994J4T3
- Related
- ENSP00000316357.6, ENST00000324545.9
- Conserved Domains (1) summary
-
- cd02659
Location:1555 → 1958
- peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
-
NM_001039591.3 → NP_001034680.2 ubiquitin carboxyl-terminal hydrolase 9X isoform 4
See identical proteins and their annotated locations for NP_001034680.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice site at the 3' end of an exon compared to variant 3. The resulting isoform (4) has the same N- and C-termini but is shorter compared to isoform 3.
- Source sequence(s)
-
AA261797, AL109797, AL391259, AW183065, BC046205, BC063645, BE925861, BX956755, CD619095, DA854185, X98296
- Consensus CDS
-
CCDS55403.1
- UniProtKB/Swiss-Prot
- O75550, Q8WWT3, Q8WX12, Q93008
- UniProtKB/TrEMBL
-
A0A994J4T3
- Related
- ENSP00000367558.2, ENST00000378308.7
- Conserved Domains (3) summary
-
- cd02659
Location:1555 → 1958
- peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
- pfam12030
Location:2097 → 2476
- DUF3517; Domain of unknown function (DUF3517)
- cl28922
Location:900 → 964
- Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
-
NM_001410748.1 → NP_001397677.1 ubiquitin carboxyl-terminal hydrolase 9X isoform 5
Status: REVIEWED
- Source sequence(s)
-
AL109797, AL391259
- Consensus CDS
-
CCDS94594.1
- UniProtKB/TrEMBL
- A0A994J4R6, A0A994J4T3
-
NM_001410749.1 → NP_001397678.1 ubiquitin carboxyl-terminal hydrolase 9X isoform 6
Status: REVIEWED
- Source sequence(s)
-
AL109797, AL391259
- Consensus CDS
-
CCDS94593.1
- UniProtKB/TrEMBL
- A0A994J4T3, A0A994J6S4
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
41085445..41236579
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047442548.1 → XP_047298504.1 ubiquitin carboxyl-terminal hydrolase 9X isoform X2
- UniProtKB/TrEMBL
-
A0A994J4T3
-
XM_047442550.1 → XP_047298506.1 ubiquitin carboxyl-terminal hydrolase 9X isoform X4
- UniProtKB/Swiss-Prot
- O75550, Q8WWT3, Q8WX12, Q93008
- UniProtKB/TrEMBL
-
A0A994J4T3
-
XM_005272675.5 → XP_005272732.1 ubiquitin carboxyl-terminal hydrolase 9X isoform X1
See identical proteins and their annotated locations for XP_005272732.1
- UniProtKB/TrEMBL
- A0A994J4R6, A0A994J4T3
- Related
- ENSP00000515604.1, ENST00000703987.1
- Conserved Domains (2) summary
-
- cd02659
Location:1560 → 1963
- peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
- pfam00443
Location:1562 → 1958
- UCH; Ubiquitin carboxyl-terminal hydrolase
-
XM_005272676.5 → XP_005272733.1 ubiquitin carboxyl-terminal hydrolase 9X isoform X3
See identical proteins and their annotated locations for XP_005272733.1
- UniProtKB/TrEMBL
- A0A994J4T3, A0A994J6S4
- Related
- ENSP00000515603.1, ENST00000703986.1
- Conserved Domains (2) summary
-
- cd02659
Location:1560 → 1963
- peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
- pfam00443
Location:1562 → 1958
- UCH; Ubiquitin carboxyl-terminal hydrolase
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
40487470..40638605
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054327932.1 → XP_054183907.1 ubiquitin carboxyl-terminal hydrolase 9X isoform X2
- UniProtKB/TrEMBL
-
A0A994J4T3
-
XM_054327934.1 → XP_054183909.1 ubiquitin carboxyl-terminal hydrolase 9X isoform X4
- UniProtKB/Swiss-Prot
- O75550, Q8WWT3, Q8WX12, Q93008
- UniProtKB/TrEMBL
-
A0A994J4T3
-
XM_054327931.1 → XP_054183906.1 ubiquitin carboxyl-terminal hydrolase 9X isoform X1
- UniProtKB/TrEMBL
- A0A994J4R6, A0A994J4T3
-
XM_054327933.1 → XP_054183908.1 ubiquitin carboxyl-terminal hydrolase 9X isoform X3
- UniProtKB/TrEMBL
- A0A994J4T3, A0A994J6S4
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_004652.3: Suppressed sequence
- Description
- NM_004652.3: This RefSeq was temporarily suppressed because currently there is insufficient data to support this transcript.
-
NM_021906.2: Suppressed sequence
- Description
- NM_021906.2: This RefSeq was temporarily suppressed because currently there is insufficient data to support this transcript.