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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009786.1 RefSeqGene
- Range
-
4985..21088
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_160
mRNA and Protein(s)
-
NM_002641.4 → NP_002632.1 phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform 1
See identical proteins and their annotated locations for NP_002632.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
- Source sequence(s)
-
BQ026877, D11466
- Consensus CDS
-
CCDS14165.1
- UniProtKB/Swiss-Prot
- B4E0V2, P37287, Q16025, Q16250
- UniProtKB/TrEMBL
- A0A2K4Z9P8, A0A2K4Z9Q9, A0A2K4Z9S0, A0A2K4Z9S8, A0A2K4Z9T1, A0A2K4Z9T4, A0A2K4Z9T5, A0A2K4Z9T7, A0A2K4Z9T8, A0A2K4Z9U3, A0A2K4Z9V6, A0A2K4Z9V8, A0A2K4Z9W0, A0A2K4Z9W1, A0A2K4Z9W2, A0A2K4Z9W5, A0A2K4Z9W7, A0A2K4Z9W8, A0A2K4Z9X1, A0A2K4Z9X3, A0A2K4Z9X9, A0A2K4Z9Y1, A0A2K4Z9Z2, A0A2K4ZA02, B2RCE0
- Related
- ENSP00000369820.3, ENST00000333590.6
- Conserved Domains (1) summary
-
- cd03796
Location:34 → 432
- GT1_PIG-A_like; This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate ...
-
NM_020473.3 → NP_065206.3 phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform 3
See identical proteins and their annotated locations for NP_065206.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and uses an alternate start codon, compared to variant 1. The resulting isoform (3) has a distinct and shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK303538, BC038236, BQ026877, DA951065
- Consensus CDS
-
CCDS48086.2
- UniProtKB/TrEMBL
-
A0A2K4Z9X5
- Related
- ENSP00000489540.1, ENST00000634582.1
- Conserved Domains (1) summary
-
- cl10013
Location:5 → 198
- Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
RNA
-
NR_033835.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in the 5' region, compared to variant 1. This variant is represented as non-coding because the use of the supported start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK098047, BC038236, BQ026877, DC347872
- Related
-
ENST00000635598.1
-
NR_033836.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate splice site in the 5' region, compared to variant 1. This variant is represented as non-coding because it lacks a significant portion of the 5' coding region, as found in variant 1, and multiple upstream ORFs are present, which are predicted to interfere with the translation of the longest ORF.
- Source sequence(s)
-
BC038236, BQ026877, CX870731, DA951065
- Related
-
ENST00000638131.1
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
15319451..15335554 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011545539.3 → XP_011543841.1 phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X1
- UniProtKB/TrEMBL
-
A0A2K4Z9X5
- Conserved Domains (2) summary
-
- COG0438
Location:3 → 170
- RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
- cl10013
Location:6 → 201
- Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
14902337..14918440 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054327210.1 → XP_054183185.1 phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X1
- UniProtKB/TrEMBL
-
A0A2K4Z9X5
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_020472.1: Suppressed sequence
- Description
- NM_020472.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.