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    LOC101929586 uncharacterized LOC101929586 [ Homo sapiens (human) ]

    Gene ID: 101929586, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101929586
    Gene description
    uncharacterized LOC101929586
    See related
    Ensembl:ENSG00000259175
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 1.8), kidney (RPKM 0.3) and 5 other tissues See more
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    Genomic context

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    See LOC101929586 in Genome Data Viewer
    Location:
    15q25.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (80554609..80562944, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (78418196..78426530, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (80846950..80855285, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ARNT2 divergent transcript Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_41531 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:80696155-80696655 Neighboring gene aryl hydrocarbon receptor nuclear translocator 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:80727509-80728008 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:80728334-80729533 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:80772226-80773145 Neighboring gene uncharacterized LOC124903537 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:80773146-80774064 Neighboring gene uncharacterized LOC124903538 Neighboring gene microRNA 5572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:80907671-80908172 Neighboring gene NANOG hESC enhancer GRCh37_chr15:80946482-80946983 Neighboring gene RNA, U6 small nuclear 380, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120363.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC041477
      Related
      ENST00000558208.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      80554609..80562944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      78418196..78426530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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