U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC02270 long intergenic non-protein coding RNA 2270 [ Homo sapiens (human) ]

    Gene ID: 101929019, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC02270provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2270provided by HGNC
    Primary source
    HGNC:HGNC:53185
    See related
    Ensembl:ENSG00000251210 AllianceGenome:HGNC:53185
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC02270 in Genome Data Viewer
    Location:
    4p15.33
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (12223451..12251286)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (12201751..12229796)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (12225075..12252910)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374489 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:11823529-11824136 Neighboring gene uncharacterized LOC107986179 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:11981013-11981720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:12029015-12029514 Neighboring gene NANOG hESC enhancer GRCh37_chr4:12244790-12245373 Neighboring gene RNA, U6 small nuclear 578, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:12365807-12366306 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:12422706-12423905 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:12432477-12433676 Neighboring gene uncharacterized LOC105374492 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:12525597-12526098 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:12526099-12526598 Neighboring gene uncharacterized LOC105374490

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125910.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC042433, BQ441613
      Related
      ENST00000505386.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      12223451..12251286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      12201751..12229796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials