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    TTTY15 testis expressed transcript, Y-linked 15 [ Homo sapiens (human) ]

    Gene ID: 64595, updated on 10-Dec-2024

    Summary

    Official Symbol
    TTTY15provided by HGNC
    Official Full Name
    testis expressed transcript, Y-linked 15provided by HGNC
    Primary source
    HGNC:HGNC:18567
    See related
    Ensembl:ENSG00000114374 AllianceGenome:HGNC:18567
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NCRNA00138
    Expression
    Broad expression in prostate (RPKM 2.0), testis (RPKM 1.6) and 19 other tissues See more
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    Genomic context

    See TTTY15 in Genome Data Viewer
    Location:
    Yq11.221
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (12662352..12692233)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (13570627..13600506)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (14774283..14804162)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene shroom family member 2 pseudogene 1 Neighboring gene mediator complex subunit 14 pseudogene 1 Neighboring gene uncharacterized LOC112268311 Neighboring gene ubiquitin specific peptidase 9 Y-linked Neighboring gene chromodomain Y-linked 4 pseudogene Neighboring gene DEAD-box helicase 3 Y-linked

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    Other Names

    • testis-specific transcript, Y-linked 15 (non-protein coding)

    Clone Names

    • DKFZp434I143

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001545.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC244213
      Related
      ENST00000440408.5
    2. NR_174085.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC244213
    3. NR_174086.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC244213
    4. NR_174087.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC244213
    5. NR_174088.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC244213

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      12662352..12692233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      13570627..13600506
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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