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    Cfap210 cilia and flagella associated protein 210 [ Mus musculus (house mouse) ]

    Gene ID: 75051, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Cfap210provided by MGI
    Official Full Name
    cilia and flagella associated protein 210provided by MGI
    Primary source
    MGI:MGI:1923100
    See related
    Ensembl:ENSMUSG00000070883 AllianceGenome:MGI:1923100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccdc173; 4930525K21Rik; 4930578N16Rik
    Summary
    Involved in flagellated sperm motility. Is active in axonemal B tubule inner sheath and sperm flagellum. Orthologous to human CFAP210 (cilia and flagella associated protein 210). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 3.4), CNS E11.5 (RPKM 1.2) and 8 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Cfap210 in Genome Data Viewer
    Location:
    2 C2; 2 40.95 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (69587736..69619873, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (69757392..69789617, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene FAST kinase domains 1 Neighboring gene STARR-seq mESC enhancer starr_04743 Neighboring gene STARR-positive B cell enhancer ABC_E10110 Neighboring gene peptidyl-prolyl isomerase G (cyclophilin G) Neighboring gene STARR-positive B cell enhancer mm9_chr2:69582878-69583179 Neighboring gene 60S ribosomal protein L13-like Neighboring gene STARR-seq mESC enhancer starr_04744 Neighboring gene STARR-positive B cell enhancer ABC_E4461 Neighboring gene phosphatase, orphan 2 Neighboring gene predicted gene 13624

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking. Chen Z, et al. Cell, 2023 Nov 9. PMID 37865089, Free PMC Article
    2. In-cell structural insight into the stability of sperm microtubule doublet. Tai L, et al. Cell Discov, 2023 Nov 21. PMID 37989994, Free PMC Article
    3. Structures of sperm flagellar doublet microtubules expand the genetic spectrum of male infertility. Zhou L, et al. Cell, 2023 Jun 22. PMID 37295417
    4. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in flagellated sperm motility IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in axonemal B tubule inner sheath IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in axonemal microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in axonemal microtubule ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in axonemal microtubule ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in sperm flagellum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cilia- and flagella- associated protein 210
    Names
    coiled-coil domain containing 173
    coiled-coil domain-containing protein 173
    protein CFAP210

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077684.2 → NP_001071152.1  cilia- and flagella- associated protein 210 isoform 1

      See identical proteins and their annotated locations for NP_001071152.1

      Status: VALIDATED

      Source sequence(s)
      AL845261
      Consensus CDS
      CCDS38138.1
      UniProtKB/Swiss-Prot
      A0JLY1
      UniProtKB/TrEMBL
      B7ZN54
      Related
      ENSMUSP00000092548.4, ENSMUST00000094942.4
      Conserved Domains (1) summary
      pfam13868
      Location:142 → 466
      TPH; Trichohyalin-plectin-homology domain

    2. NM_001418782.1 → NP_001405711.1  cilia- and flagella- associated protein 210 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL845261

    RNA

    1. NR_184817.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845261

    2. NR_184818.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845261

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      69587736..69619873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239823.1 → XP_011238125.1  cilia- and flagella- associated protein 210 isoform X1

      See identical proteins and their annotated locations for XP_011238125.1

      Conserved Domains (1) summary
      pfam13868
      Location:62 → 295
      TPH; Trichohyalin-plectin-homology domain

    2. XM_006500324.3 → XP_006500387.1  cilia- and flagella- associated protein 210 isoform X2

      Conserved Domains (1) summary
      pfam13868
      Location:1 → 230
      TPH; Trichohyalin-plectin-homology domain

    3. XM_006500322.3 → XP_006500385.1  cilia- and flagella- associated protein 210 isoform X1

      See identical proteins and their annotated locations for XP_006500385.1

      Conserved Domains (1) summary
      pfam13868
      Location:62 → 295
      TPH; Trichohyalin-plectin-homology domain

    4. XM_006500325.5 → XP_006500388.1  cilia- and flagella- associated protein 210 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JLY1.1 GenPept UniProtKB/Swiss-Prot:A0JLY1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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