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    S100PBP S100P binding protein [ Bos taurus (domestic cattle) ]

    Gene ID: 539983, updated on 30-Jan-2025

    Summary

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    Official Symbol
    S100PBPprovided by VGNC
    Official Full Name
    S100P binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:34250
    See related
    BGD:BT11177; EnsemblRapid:ENSBTAG00070010118
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See S100PBP in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (120815274..120849453, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL22-like Neighboring gene fibronectin type III domain containing 5 Neighboring gene tyrosyl-tRNA synthetase 1 Neighboring gene KIAA1522 Neighboring gene uncharacterized LOC101907639

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128690

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S100P-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034687.2 → NP_001029859.1  S100P-binding protein

      See identical proteins and their annotated locations for NP_001029859.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105238
      UniProtKB/Swiss-Prot
      Q3MHH3
      Conserved Domains (1) summary
      pfam15427
      Location:21 → 408
      S100PBPR; S100P-binding protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      120815274..120849453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059876101.1 → XP_059732084.1  S100P-binding protein isoform X1

    2. XM_059876097.1 → XP_059732080.1  S100P-binding protein isoform X1

    3. XM_059876083.1 → XP_059732066.1  S100P-binding protein isoform X1

    4. XM_005202995.4 → XP_005203052.1  S100P-binding protein isoform X4

      See identical proteins and their annotated locations for XP_005203052.1

      UniProtKB/TrEMBL
      A0AAF6Z575
      Related
      ENSBTAP00070013318.1, ENSBTAT00070022631.1
      Conserved Domains (1) summary
      pfam15427
      Location:21 → 409
      S100PBPR; S100P-binding protein

    5. XM_059876104.1 → XP_059732087.1  S100P-binding protein isoform X2

    6. XM_059876077.1 → XP_059732060.1  S100P-binding protein isoform X1

    7. XM_015459654.3 → XP_015315140.1  S100P-binding protein isoform X3

      Conserved Domains (1) summary
      pfam15427
      Location:30 → 418
      S100PBPR; S100P-binding protein

    8. XM_059876099.1 → XP_059732082.1  S100P-binding protein isoform X1

    9. XM_059876092.1 → XP_059732075.1  S100P-binding protein isoform X1

    10. XM_059876113.1 → XP_059732096.1  S100P-binding protein isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3MHH3.1 GenPept UniProtKB/Swiss-Prot:Q3MHH3

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