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    IWS1 interacts with SUPT6H, CTD assembly factor 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 538614, updated on 29-Jan-2025

    Summary

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    Official Symbol
    IWS1provided by VGNC
    Official Full Name
    interacts with SUPT6H, CTD assembly factor 1provided by VGNC
    Primary source
    VGNC:VGNC:30354
    See related
    BGD:BT19171; Ensembl:ENSBTAG00000021172
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See IWS1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (5012286..5061593)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene LIM zinc finger domain containing 2 Neighboring gene G protein-coupled receptor 17 Neighboring gene myosin VIIB Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene ras-related GTP-binding protein C-like Neighboring gene protein C, inactivator of coagulation factors Va and VIIIa

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein IWS1 homolog
    Names
    IWS1 homolog
    IWS1, SUPT6H interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      5012286..5061593
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010801820.4 → XP_010800122.1  protein IWS1 homolog isoform X1

      See identical proteins and their annotated locations for XP_010800122.1

      UniProtKB/TrEMBL
      A0AAA9TLK4
      Conserved Domains (2) summary
      cl00146
      Location:461 → 821
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
      cl01342
      Location:191 → 294
      Peptidase_A22B; Signal peptide peptidase

    2. XM_010801821.4 → XP_010800123.1  protein IWS1 homolog isoform X3

      See identical proteins and their annotated locations for XP_010800123.1

      UniProtKB/TrEMBL
      A0AAA9SS17
      Related
      ENSBTAP00070002274.1, ENSBTAT00070004077.1
      Conserved Domains (2) summary
      cl00146
      Location:460 → 820
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
      cl01342
      Location:191 → 294
      Peptidase_A22B; Signal peptide peptidase

    3. XM_005202240.5 → XP_005202297.1  protein IWS1 homolog isoform X2

      See identical proteins and their annotated locations for XP_005202297.1

      UniProtKB/TrEMBL
      A0AAA9TLK4
      Related
      ENSBTAP00070002272.1, ENSBTAT00070004072.1
      Conserved Domains (2) summary
      cl00146
      Location:460 → 820
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
      cl01342
      Location:190 → 293
      Peptidase_A22B; Signal peptide peptidase

    4. XM_005202241.5 → XP_005202298.1  protein IWS1 homolog isoform X5

      See identical proteins and their annotated locations for XP_005202298.1

      UniProtKB/TrEMBL
      A0AAA9SS17
      Related
      ENSBTAP00070002282.1, ENSBTAT00070004090.1
      Conserved Domains (2) summary
      cl00146
      Location:459 → 819
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
      cl01342
      Location:190 → 293
      Peptidase_A22B; Signal peptide peptidase

    5. XM_010801822.4 → XP_010800124.1  protein IWS1 homolog isoform X4

      See identical proteins and their annotated locations for XP_010800124.1

      UniProtKB/TrEMBL
      A0AAA9TLK4
      Related
      ENSBTAP00070002261.1, ENSBTAT00070004056.1
      Conserved Domains (2) summary
      cl00146
      Location:461 → 806
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
      cl01342
      Location:191 → 294
      Peptidase_A22B; Signal peptide peptidase

    6. XM_059877685.1 → XP_059733668.1  protein IWS1 homolog isoform X6

      UniProtKB/TrEMBL
      A0AAA9TLK4

    7. XM_059877687.1 → XP_059733670.1  protein IWS1 homolog isoform X8

      UniProtKB/TrEMBL
      A0AAA9TLK4

    8. XM_059877686.1 → XP_059733669.1  protein IWS1 homolog isoform X7

      UniProtKB/TrEMBL
      A0AAA9TLK4
    Nucleotide Protein Strain
    Heading Accession and Version

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