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    XIST X (inactive)-specific transcript [ Bos taurus (domestic cattle) ]

    Gene ID: 338325, updated on 30-Jan-2025

    Summary

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    Gene symbol
    XIST
    Gene description
    X (inactive)-specific transcript
    See related
    EnsemblRapid:ENSBTAG00070035575
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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    Genomic context

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    See XIST in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (77161577..77198299)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104970537 Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like Neighboring gene microRNA mir-421 Neighboring gene rho guanine nucleotide exchange factor 7-like Neighboring gene cysteine rich hydrophobic domain 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. LncRNA XIST mediates bovine mammary epithelial cell inflammatory response via NF-κB/NLRP3 inflammasome pathway. Ma M, et al. Cell Prolif, 2019 Jan. PMID 30362186, Free PMC Article
    2. Aberrant DNA methylation imprints in aborted bovine clones. Liu JH, et al. Mol Reprod Dev, 2008 Apr. PMID 17886268
    3. Sex-chromosome linked gene expression in in-vitro produced bovine embryos. Peippo J, et al. Mol Hum Reprod, 2002 Oct. PMID 12356942
    4. Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Chureau C, et al. Genome Res, 2002 Jun. PMID 12045143, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      77161577..77198299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001495596.2 RNA Sequence

      Related
      ENSBTAT00070079696.1

    2. XR_001495595.2 RNA Sequence

    3. XR_001495594.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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