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    SF3A2 splicing factor 3a subunit 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 789082, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SF3A2provided by VGNC
    Official Full Name
    splicing factor 3a subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:34507
    See related
    BGD:BT29507; EnsemblRapid:ENSBTAG00070003166
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SF3A2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (21392148..21400795)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene DOT1 like histone lysine methyltransferase Neighboring gene pleckstrin homology domain containing J1 Neighboring gene anti-Mullerian hormone Neighboring gene junctional sarcoplasmic reticulum protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC138049

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 3A subunit 2
    Names
    splicing factor 3a, subunit 2, 66kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099211.1 → NP_001092681.1  splicing factor 3A subunit 2

      See identical proteins and their annotated locations for NP_001092681.1

      Status: PROVISIONAL

      Source sequence(s)
      BC142185
      UniProtKB/Swiss-Prot
      A5PJN8
      Related
      ENSBTAP00070004305.1, ENSBTAT00070007279.1
      Conserved Domains (2) summary
      COG5246
      Location:1 → 217
      PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
      PRK14951
      Location:299 → 411
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      21392148..21400795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024994713.2 → XP_024850481.1  splicing factor 3A subunit 2 isoform X1

      UniProtKB/Swiss-Prot
      A5PJN8
      Conserved Domains (2) summary
      COG5246
      Location:1 → 217
      PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
      PRK14951
      Location:299 → 411
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5PJN8.1 GenPept UniProtKB/Swiss-Prot:A5PJN8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.