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    STX10 syntaxin 10 [ Bos taurus (domestic cattle) ]

    Gene ID: 525379, updated on 29-Jan-2025

    Summary

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    Official Symbol
    STX10provided by VGNC
    Official Full Name
    syntaxin 10provided by VGNC
    Primary source
    VGNC:VGNC:35430
    See related
    BGD:BT22474; Ensembl:ENSBTAG00000016352
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human all
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    Genomic context

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    See STX10 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (12438436..12447993)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 A Neighboring gene microRNA mir-12000 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene immediate early response 2 Neighboring gene nucleus accumbens associated 1 Neighboring gene tRNA methyltransferase 1 Neighboring gene LYL1 basic helix-loop-helix family member Neighboring gene nuclear factor I X

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193077.1 → NP_001180006.1  syntaxin-10

      See identical proteins and their annotated locations for NP_001180006.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000007
      UniProtKB/TrEMBL
      A0AAA9TBE6
      Related
      ENSBTAP00070019519.1, ENSBTAT00070033181.1
      Conserved Domains (2) summary
      cd15851
      Location:168 → 225
      SNARE_Syntaxin6; SNARE motif of syntaxin 6
      pfam09177
      Location:13 → 103
      Syntaxin-6_N; Syntaxin 6, N-terminal

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      12438436..12447993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010806690.4 → XP_010804992.1  syntaxin-10 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TIV0
      Conserved Domains (2) summary
      cd15851
      Location:200 → 257
      SNARE_Syntaxin6; SNARE motif of syntaxin 6
      pfam09177
      Location:45 → 135
      Syntaxin-6_N; Syntaxin 6, N-terminal

    2. XM_010806691.4 → XP_010804993.1  syntaxin-10 isoform X2

      UniProtKB/TrEMBL
      A0AAA9T7C5
      Related
      ENSBTAP00070019538.1, ENSBTAT00070033200.1
      Conserved Domains (2) summary
      cd15851
      Location:168 → 225
      SNARE_Syntaxin6; SNARE motif of syntaxin 6
      pfam09177
      Location:13 → 103
      Syntaxin-6_N; Syntaxin 6, N-terminal

    3. XM_005208614.5 → XP_005208671.1  syntaxin-10 isoform X4

      UniProtKB/TrEMBL
      A0AAA9TIV0
      Conserved Domains (2) summary
      cd15851
      Location:200 → 256
      SNARE_Syntaxin6; SNARE motif of syntaxin 6
      pfam09177
      Location:45 → 135
      Syntaxin-6_N; Syntaxin 6, N-terminal

    4. XM_005208613.5 → XP_005208670.1  syntaxin-10 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SYT3, A0AAA9TIV0
      Related
      ENSBTAP00070019525.1, ENSBTAT00070033187.1
      Conserved Domains (2) summary
      cd15851
      Location:200 → 257
      SNARE_Syntaxin6; SNARE motif of syntaxin 6
      pfam09177
      Location:45 → 135
      Syntaxin-6_N; Syntaxin 6, N-terminal

    5. XM_010806692.4 → XP_010804994.1  syntaxin-10 isoform X5

      See identical proteins and their annotated locations for XP_010804994.1

      UniProtKB/TrEMBL
      A0AAA9TBE6
      Related
      ENSBTAP00070019535.1, ENSBTAT00070033197.1
      Conserved Domains (2) summary
      pfam09177
      Location:13 → 103
      Syntaxin-6_N; Syntaxin 6, N-terminal
      cl22856
      Location:168 → 192
      SNARE; SNARE motif

    RNA

    1. XR_807615.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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