SEC13 SEC13 homolog, nuclear pore and COPII coat complex component [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: SEC13provided by VGNC
Official Full Name: SEC13 homolog, nuclear pore and COPII coat complex componentprovided by VGNC
Primary source: VGNC:VGNC:34403
See related: BGD:BT20534; Ensembl:ENSBTAG00000017825
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_12	current	ARS-UCD2.0 (GCF_002263795.3)	22	NC_037349.1 (54326136..54361315, complement)

Chromosome 22 - NC_037349.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Dominette sequence data
BioProject: PRJNA294306
Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables structural molecule activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in COPII-coated vesicle budding	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of TOR signaling	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein exit from endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein import into nucleus	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of COPII vesicle coat	IEA Inferred from Electronic Annotation more info	PubMed
part_of nuclear pore outer ring	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein SEC13 homolog

Names: GATOR complex protein SEC13; GATOR2 complex protein SEC13; SEC13-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001075565.2 → NP_001069033.1 protein SEC13 homolog

See identical proteins and their annotated locations for NP_001069033.1

Status: PROVISIONAL

Source sequence(s)

BC102514

UniProtKB/Swiss-Prot

Q3ZCC9

UniProtKB/TrEMBL

A0AAA9TSJ7

Related

ENSBTAP00070035590.1, ENSBTAT00070059962.1

Conserved Domains (2) summary

sd00039
Location:61 → 101

7WD40; WD40 repeat [structural motif]

cl25539
Location:10 → 289

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...