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    SSR4 signal sequence receptor subunit 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 504438, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SSR4provided by VGNC
    Official Full Name
    signal sequence receptor subunit 4provided by VGNC
    Primary source
    VGNC:VGNC:35322
    See related
    BGD:BT13461; EnsemblRapid:ENSBTAG00070035577
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SSR4 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (37011768..37015530)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene SRSF protein kinase 3 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma Neighboring gene PDZ domain containing 4 Neighboring gene large ribosomal subunit protein eL21-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC133642

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translocon-associated protein subunit delta
    Names
    SSR-delta
    TRAP-delta
    signal sequence receptor subunit delta
    signal sequence receptor, delta (translocon-associated protein delta)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038503.2 → NP_001033592.1  translocon-associated protein subunit delta precursor

      See identical proteins and their annotated locations for NP_001033592.1

      Status: PROVISIONAL

      Source sequence(s)
      BC109500
      UniProtKB/Swiss-Prot
      Q2TBX5
      UniProtKB/TrEMBL
      A0AAF6Z993
      Related
      ENSBTAP00070048331.1, ENSBTAT00070079777.1
      Conserved Domains (1) summary
      pfam05404
      Location:23 → 171
      TRAP-delta; Translocon-associated protein, delta subunit precursor (TRAP-delta)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      37011768..37015530
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227671.3 → XP_005227728.1  translocon-associated protein subunit delta isoform X1

      See identical proteins and their annotated locations for XP_005227728.1

      UniProtKB/TrEMBL
      A0AAF6Z993
      Related
      ENSBTAP00070048345.1, ENSBTAT00070079809.1
      Conserved Domains (1) summary
      pfam05404
      Location:23 → 172
      TRAP-delta; Translocon-associated protein, delta subunit precursor (TRAP-delta)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2TBX5.1 GenPept UniProtKB/Swiss-Prot:Q2TBX5

    Gene LinkOut

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