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    CXXC1 CXXC finger protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 511446, updated on 30-Jan-2025

    Summary

    Official Symbol
    CXXC1provided by VGNC
    Official Full Name
    CXXC finger protein 1provided by VGNC
    Primary source
    VGNC:VGNC:27859
    See related
    BGD:BT17837; EnsemblRapid:ENSBTAG00070023971
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See CXXC1 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 24 NC_037351.1 (49949350..49954796, complement)

    Chromosome 24 - NC_037351.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 53 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene methyl-CpG binding domain protein 1 Neighboring gene spindle and kinetochore associated complex subunit 1 Neighboring gene microRNA mir-2285cg

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037351.1 Chromosome 24 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General gene information

    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    CXXC-type zinc finger protein 1
    Names
    CXXC finger 1 (PHD domain)
    PHD finger and CXXC domain-containing protein 1
    cpG-binding protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024517.1NP_001019688.1  CXXC-type zinc finger protein 1

      See identical proteins and their annotated locations for NP_001019688.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020741
      UniProtKB/Swiss-Prot
      Q5EA28
      Related
      ENSBTAP00070032385.1, ENSBTAT00070054019.1
      Conserved Domains (3) summary
      pfam02008
      Location:164210
      zf-CXXC; CXXC zinc finger domain
      cd15553
      Location:2873
      PHD_Cfp1; PHD finger found in CXXC-type zinc finger protein 1 (Cfp1)
      pfam12269
      Location:404638
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037351.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      49949350..49954796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)