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    2900026A02Rik RIKEN cDNA 2900026A02 gene [ Mus musculus (house mouse) ]

    Gene ID: 243219, updated on 27-Nov-2024

    Summary

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    Official Symbol
    2900026A02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2900026A02 geneprovided by MGI
    Primary source
    MGI:MGI:1920194
    See related
    Ensembl:ENSMUSG00000051339 AllianceGenome:MGI:1920194
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm449; Kiaa1671; mKIAA1671; A530094D01; 8430408O14Rik
    Summary
    Is expressed in alimentary system; lower urinary tract; sensory organ; skin; and submandibular gland primordium. Orthologous to human KIAA1671 (KIAA1671). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in small intestine adult (RPKM 14.4), large intestine adult (RPKM 14.2) and 25 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 2900026A02Rik in Genome Data Viewer
    Location:
    5 F; 5 55.38 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (113234189..113369158, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (113086323..113221292, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 43247 Neighboring gene crystallin, beta B2 Neighboring gene crystallin, beta B3 Neighboring gene RIKEN cDNA 4833439F03 gene Neighboring gene VISTA enhancer mm329 Neighboring gene predicted gene, 42161 Neighboring gene LHFPL tetraspan subfamily member 7 Neighboring gene small G protein signaling modulator 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein KIAA1671

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347397.1 → NP_001334326.1  uncharacterized protein KIAA1671 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AC162528
      Consensus CDS
      CCDS84933.1
      UniProtKB/TrEMBL
      A0A1D5RLN6
      Related
      ENSMUSP00000148442.2, ENSMUST00000212276.2

    2. NM_001375886.1 → NP_001362815.1  uncharacterized protein KIAA1671 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC162528
      UniProtKB/TrEMBL
      A0A1B0GR85
      Conserved Domains (3) summary
      PRK07003
      Location:142 → 406
      PRK07003; DNA polymerase III subunit gamma/tau
      PRK10263
      Location:207 → 761
      PRK10263; DNA translocase FtsK; Provisional
      pfam15327
      Location:1593 → 1758
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

    3. NM_172884.3 → NP_766472.1  uncharacterized protein KIAA1671 isoform 2

      See identical proteins and their annotated locations for NP_766472.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AC162528, AK171617
      Consensus CDS
      CCDS39217.1
      UniProtKB/Swiss-Prot
      B2RVT5, Q5DTV9, Q8BRV5
      Related
      ENSMUSP00000058789.9, ENSMUST00000050125.9
      Conserved Domains (1) summary
      pfam15327
      Location:133 → 299
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      113234189..113369158 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320881.2 → XP_017176370.1  uncharacterized protein KIAA1671 isoform X1

      UniProtKB/TrEMBL
      A0A1B0GR85
      Related
      ENSMUSP00000147419.2, ENSMUST00000211733.2
      Conserved Domains (3) summary
      PRK07003
      Location:142 → 406
      PRK07003; DNA polymerase III subunit gamma/tau
      PRK10263
      Location:207 → 761
      PRK10263; DNA translocase FtsK; Provisional
      pfam15327
      Location:1593 → 1758
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

    2. XM_036165128.1 → XP_036021021.1  uncharacterized protein KIAA1671 isoform X1

      UniProtKB/TrEMBL
      A0A1B0GR85
      Conserved Domains (3) summary
      PRK07003
      Location:142 → 406
      PRK07003; DNA polymerase III subunit gamma/tau
      PRK10263
      Location:207 → 761
      PRK10263; DNA translocase FtsK; Provisional
      pfam15327
      Location:1593 → 1758
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

    3. XM_030254503.2 → XP_030110363.1  uncharacterized protein KIAA1671 isoform X1

      UniProtKB/TrEMBL
      A0A1B0GR85
      Conserved Domains (3) summary
      PRK07003
      Location:142 → 406
      PRK07003; DNA polymerase III subunit gamma/tau
      PRK10263
      Location:207 → 761
      PRK10263; DNA translocase FtsK; Provisional
      pfam15327
      Location:1593 → 1758
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

    4. XM_006534936.4 → XP_006534999.1  uncharacterized protein KIAA1671 isoform X1

      See identical proteins and their annotated locations for XP_006534999.1

      UniProtKB/TrEMBL
      A0A1B0GR85
      Conserved Domains (3) summary
      PRK07003
      Location:142 → 406
      PRK07003; DNA polymerase III subunit gamma/tau
      PRK10263
      Location:207 → 761
      PRK10263; DNA translocase FtsK; Provisional
      pfam15327
      Location:1593 → 1758
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BRV5.1 GenPept UniProtKB/Swiss-Prot:Q8BRV5

    Gene LinkOut

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