U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm8369 predicted gene 8369 [ Mus musculus (house mouse) ]

    Gene ID: 666926, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm8369provided by MGI
    Official Full Name
    predicted gene 8369provided by MGI
    Primary source
    MGI:MGI:3645380
    See related
    Ensembl:ENSMUSG00000058470 AllianceGenome:MGI:3645380
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG666926
    Summary
    Predicted to be active in Golgi apparatus and plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in spleen adult (RPKM 1.5), mammary gland adult (RPKM 0.7) and 4 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm8369 in Genome Data Viewer
    Location:
    19 A; 19 8.44 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11469150..11489941)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11488955..11512577)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene membrane-spanning 4-domains, subfamily A, member 4B Neighboring gene membrane-spanning 4-domains, subfamily A, member 6C Neighboring gene expressed sequence BE692007 Neighboring gene STARR-positive B cell enhancer ABC_E7634 Neighboring gene STARR-positive B cell enhancer ABC_E4266 Neighboring gene STARR-positive B cell enhancer ABC_E11672 Neighboring gene STARR-positive B cell enhancer ABC_E8739 Neighboring gene membrane-spanning 4-domains, subfamily A, member 6B Neighboring gene membrane-spanning 4-domains, subfamily A, member 4D

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    membrane-spanning 4-domains, subfamily A, member 4-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164202.1 → NP_001157674.1  membrane-spanning 4-domains, subfamily A, member 4-like

      See identical proteins and their annotated locations for NP_001157674.1

      Status: PROVISIONAL

      Source sequence(s)
      AC165168, BB637086, BE861164
      Consensus CDS
      CCDS50396.1
      UniProtKB/TrEMBL
      E9PZI3
      Related
      ENSMUSP00000132521.2, ENSMUST00000079855.11
      Conserved Domains (1) summary
      pfam04103
      Location:18 → 68
      CD20; CD20-like family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      11469150..11489941
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527259.4 → XP_006527322.1  membrane-spanning 4-domains, subfamily A, member 4-like isoform X1

      See identical proteins and their annotated locations for XP_006527322.1

      UniProtKB/TrEMBL
      E9PZI3
      Conserved Domains (1) summary
      pfam04103
      Location:18 → 68
      CD20; CD20-like family

    2. XM_036161654.1 → XP_036017547.1  membrane-spanning 4-domains, subfamily A, member 4-like isoform X1

      UniProtKB/TrEMBL
      E9PZI3
      Conserved Domains (1) summary
      pfam04103
      Location:18 → 68
      CD20; CD20-like family

    3. XM_006527263.2 → XP_006527326.1  membrane-spanning 4-domains, subfamily A, member 4-like isoform X1

      See identical proteins and their annotated locations for XP_006527326.1

      UniProtKB/TrEMBL
      E9PZI3
      Conserved Domains (1) summary
      pfam04103
      Location:18 → 68
      CD20; CD20-like family

    4. XM_006527260.2 → XP_006527323.1  membrane-spanning 4-domains, subfamily A, member 4-like isoform X1

      See identical proteins and their annotated locations for XP_006527323.1

      UniProtKB/TrEMBL
      E9PZI3
      Related
      ENSMUSP00000141067.2, ENSMUST00000188633.2
      Conserved Domains (1) summary
      pfam04103
      Location:18 → 68
      CD20; CD20-like family

    5. XM_006527261.3 → XP_006527324.1  membrane-spanning 4-domains, subfamily A, member 4-like isoform X1

      See identical proteins and their annotated locations for XP_006527324.1

      UniProtKB/TrEMBL
      E9PZI3
      Conserved Domains (1) summary
      pfam04103
      Location:18 → 68
      CD20; CD20-like family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools