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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001308116.2 → NP_001295045.1 polyhomeotic-like protein 3 isoform 2
See identical proteins and their annotated locations for NP_001295045.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region and uses a downstream start codon compared to variant 1. It encodes isoform 2 which has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AC008040, AI042019, AJ320486, AK304411
- Consensus CDS
-
CCDS77858.1
- UniProtKB/Swiss-Prot
- A2RRP9, Q5HYF0, Q6NSG2, Q8NDX5, Q8NFT7, Q8NFZ1, Q8TBM2, Q9H971, Q9H9I4
- UniProtKB/TrEMBL
-
A5YM43
- Related
- ENSP00000420271.1, ENST00000494943.5
- Conserved Domains (2) summary
-
- cd09577
Location:914 → 982
- SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
- smart00454
Location:916 → 983
- SAM; Sterile alpha motif
-
NM_024947.4 → NP_079223.3 polyhomeotic-like protein 3 isoform 1
See identical proteins and their annotated locations for NP_079223.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC008040, BC026001, BC131772, BP200133
- Consensus CDS
-
CCDS46952.1
- UniProtKB/TrEMBL
-
A5YM43
- Related
- ENSP00000420294.1, ENST00000495893.7
- Conserved Domains (2) summary
-
- cd09577
Location:926 → 994
- SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
- smart00454
Location:928 → 995
- SAM; Sterile alpha motif
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
170087584..170181733 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047448988.1 → XP_047304944.1 polyhomeotic-like protein 3 isoform X12
- UniProtKB/TrEMBL
-
A5YM43
-
XM_047448987.1 → XP_047304943.1 polyhomeotic-like protein 3 isoform X10
- UniProtKB/TrEMBL
-
A5YM43
-
XM_047448986.1 → XP_047304942.1 polyhomeotic-like protein 3 isoform X8
- UniProtKB/TrEMBL
-
A5YM43
-
XM_047448984.1 → XP_047304940.1 polyhomeotic-like protein 3 isoform X6
- UniProtKB/TrEMBL
-
A5YM43
-
XM_047448983.1 → XP_047304939.1 polyhomeotic-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
A5YM43
-
XM_017007235.3 → XP_016862724.1 polyhomeotic-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
A5YM43
-
XM_017007238.3 → XP_016862727.1 polyhomeotic-like protein 3 isoform X11
- UniProtKB/TrEMBL
-
A5YM43
-
XM_006713756.4 → XP_006713819.1 polyhomeotic-like protein 3 isoform X9
- UniProtKB/TrEMBL
-
A5YM43
- Conserved Domains (2) summary
-
- cd09577
Location:856 → 924
- SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
- smart00454
Location:858 → 925
- SAM; Sterile alpha motif
-
XM_017007237.3 → XP_016862726.1 polyhomeotic-like protein 3 isoform X7
- UniProtKB/TrEMBL
-
A5YM43
-
XM_011513188.4 → XP_011511490.1 polyhomeotic-like protein 3 isoform X5
- UniProtKB/TrEMBL
-
A5YM43
- Conserved Domains (2) summary
-
- cd09577
Location:889 → 957
- SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
- smart00454
Location:891 → 958
- SAM; Sterile alpha motif
-
XM_005247789.4 → XP_005247846.1 polyhomeotic-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
A5YM43
- Conserved Domains (2) summary
-
- cd09577
Location:942 → 1010
- SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
- smart00454
Location:944 → 1011
- SAM; Sterile alpha motif
-
XM_006713753.3 → XP_006713816.1 polyhomeotic-like protein 3 isoform X3
See identical proteins and their annotated locations for XP_006713816.1
- UniProtKB/TrEMBL
-
A5YM43
- Conserved Domains (2) summary
-
- cd09577
Location:930 → 998
- SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
- smart00454
Location:932 → 999
- SAM; Sterile alpha motif
-
XM_006713754.5 → XP_006713817.1 polyhomeotic-like protein 3 isoform X3
See identical proteins and their annotated locations for XP_006713817.1
- UniProtKB/TrEMBL
-
A5YM43
- Conserved Domains (2) summary
-
- cd09577
Location:930 → 998
- SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
- smart00454
Location:932 → 999
- SAM; Sterile alpha motif
-
XM_047448982.1 → XP_047304938.1 polyhomeotic-like protein 3 isoform X3
- UniProtKB/TrEMBL
-
A5YM43
-
XM_047448990.1 → XP_047304946.1 polyhomeotic-like protein 3 isoform X16
- UniProtKB/TrEMBL
-
B4E2T1
-
XM_047448989.1 → XP_047304945.1 polyhomeotic-like protein 3 isoform X14
- UniProtKB/TrEMBL
-
B4E2T1
-
XM_005247791.5 → XP_005247848.1 polyhomeotic-like protein 3 isoform X13
- UniProtKB/TrEMBL
-
B4E2T1
- Conserved Domains (1) summary
-
- pfam09770
Location:423 → 518
- PAT1; Topoisomerase II-associated protein PAT1
-
XM_011513189.4 → XP_011511491.1 polyhomeotic-like protein 3 isoform X15
- UniProtKB/TrEMBL
- B4E2T1, E7EX82
- Related
- ENSP00000419089.1, ENST00000467570.5
- Conserved Domains (1) summary
-
- pfam09770
Location:370 → 465
- PAT1; Topoisomerase II-associated protein PAT1
-
XM_005247793.4 → XP_005247850.1 polyhomeotic-like protein 3 isoform X17
- Conserved Domains (1) summary
-
- pfam09770
Location:423 → 518
- PAT1; Topoisomerase II-associated protein PAT1
-
XM_047448991.1 → XP_047304947.1 polyhomeotic-like protein 3 isoform X19
-
XM_006713757.5 → XP_006713820.1 polyhomeotic-like protein 3 isoform X18
- Conserved Domains (1) summary
-
- pfam09770
Location:423 → 518
- PAT1; Topoisomerase II-associated protein PAT1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
172872255..172966417 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054347955.1 → XP_054203930.1 polyhomeotic-like protein 3 isoform X12
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347953.1 → XP_054203928.1 polyhomeotic-like protein 3 isoform X10
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347951.1 → XP_054203926.1 polyhomeotic-like protein 3 isoform X8
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347949.1 → XP_054203924.1 polyhomeotic-like protein 3 isoform X6
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347947.1 → XP_054203922.1 polyhomeotic-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347943.1 → XP_054203918.1 polyhomeotic-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347954.1 → XP_054203929.1 polyhomeotic-like protein 3 isoform X11
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347952.1 → XP_054203927.1 polyhomeotic-like protein 3 isoform X9
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347950.1 → XP_054203925.1 polyhomeotic-like protein 3 isoform X7
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347948.1 → XP_054203923.1 polyhomeotic-like protein 3 isoform X5
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347942.1 → XP_054203917.1 polyhomeotic-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347944.1 → XP_054203919.1 polyhomeotic-like protein 3 isoform X3
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347945.1 → XP_054203920.1 polyhomeotic-like protein 3 isoform X3
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347946.1 → XP_054203921.1 polyhomeotic-like protein 3 isoform X3
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347958.1 → XP_054203933.1 polyhomeotic-like protein 3 isoform X20
- UniProtKB/TrEMBL
-
A5YM43
-
XM_054347960.1 → XP_054203935.1 polyhomeotic-like protein 3 isoform X16
- UniProtKB/TrEMBL
-
B4E2T1
-
XM_054347957.1 → XP_054203932.1 polyhomeotic-like protein 3 isoform X14
- UniProtKB/TrEMBL
-
B4E2T1
-
XM_054347956.1 → XP_054203931.1 polyhomeotic-like protein 3 isoform X13
- UniProtKB/TrEMBL
-
B4E2T1
-
XM_054347959.1 → XP_054203934.1 polyhomeotic-like protein 3 isoform X15
- UniProtKB/TrEMBL
- B4E2T1, E7EX82
-
XM_054347961.1 → XP_054203936.1 polyhomeotic-like protein 3 isoform X17
-
XM_054347963.1 → XP_054203938.1 polyhomeotic-like protein 3 isoform X19
-
XM_054347962.1 → XP_054203937.1 polyhomeotic-like protein 3 isoform X18