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    4833420G17Rik RIKEN cDNA 4833420G17 gene [ Mus musculus (house mouse) ]

    Gene ID: 67392, updated on 27-Nov-2024

    Summary

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    Official Symbol
    4833420G17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4833420G17 geneprovided by MGI
    Primary source
    MGI:MGI:1914642
    See related
    Ensembl:ENSMUSG00000062822 AllianceGenome:MGI:1914642
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2210017J06Rik; 5730533D17Rik
    Summary
    Is expressed in embryo and medial ganglionic eminence. Orthologous to human C5orf34 (chromosome 5 open reading frame 34). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E14 (RPKM 19.2), whole brain E14.5 (RPKM 16.3) and 25 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 4833420G17Rik in Genome Data Viewer
    Location:
    13 D2.3; 13 67.24 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (119599295..119622656)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (119462015..119486120)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:120196902-120197103 Neighboring gene nicotinamide nucleotide transhydrogenase Neighboring gene STARR-positive B cell enhancer ABC_E7292 Neighboring gene RIKEN cDNA 3110070M22 gene Neighboring gene STARR-seq mESC enhancer starr_35805 Neighboring gene polyadenylate binding protein-interacting protein 1 Neighboring gene predicted gene 9752 Neighboring gene transmembrane protein 267 Neighboring gene C-C motif chemokine ligand 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain. Cajigas I, et al. Mol Cell, 2018 Sep 20. PMID 30146317, Free PMC Article
    2. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
    3. Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. Tamplin OJ, et al. BMC Genomics, 2008 Oct 30. PMID 18973680, Free PMC Article
    4. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    5. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C5orf34 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113550.1 → NP_001107022.1  uncharacterized protein C5orf34 homolog

      See identical proteins and their annotated locations for NP_001107022.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate internal 5' UTR segment, as compared to variant 1.
      Source sequence(s)
      AK008565, AK146515
      Consensus CDS
      CCDS49373.1
      UniProtKB/Swiss-Prot
      Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
      Related
      ENSMUSP00000026519.9, ENSMUST00000026519.10
      Conserved Domains (2) summary
      pfam15016
      Location:455 → 541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9 → 153
      DUF4524; Domain of unknown function (DUF4524)

    2. NM_001360805.1 → NP_001347734.1  uncharacterized protein C5orf34 homolog

      Status: VALIDATED

      Source sequence(s)
      AC163689
      Consensus CDS
      CCDS49373.1
      UniProtKB/Swiss-Prot
      Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
      Conserved Domains (2) summary
      pfam15016
      Location:455 → 541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9 → 153
      DUF4524; Domain of unknown function (DUF4524)

    3. NM_026127.4 → NP_080403.4  uncharacterized protein C5orf34 homolog

      See identical proteins and their annotated locations for NP_080403.4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK008565, AK146515, BC030738, CK389219
      Consensus CDS
      CCDS49373.1
      UniProtKB/Swiss-Prot
      Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
      Related
      ENSMUSP00000153079.2, ENSMUST00000225186.2
      Conserved Domains (2) summary
      pfam15016
      Location:455 → 541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9 → 153
      DUF4524; Domain of unknown function (DUF4524)

    RNA

    1. NR_153825.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163689
      Related
      ENSMUST00000225726.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      119599295..119622656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517747.2 → XP_006517810.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517810.1

      UniProtKB/Swiss-Prot
      Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
      Related
      ENSMUSP00000153150.2, ENSMUST00000224312.2
      Conserved Domains (2) summary
      pfam15016
      Location:455 → 541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9 → 153
      DUF4524; Domain of unknown function (DUF4524)

    2. XM_006517744.2 → XP_006517807.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517807.1

      UniProtKB/Swiss-Prot
      Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
      Conserved Domains (2) summary
      pfam15016
      Location:455 → 541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9 → 153
      DUF4524; Domain of unknown function (DUF4524)

    3. XM_006517748.2 → XP_006517811.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517811.1

      UniProtKB/Swiss-Prot
      Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
      Conserved Domains (2) summary
      pfam15016
      Location:455 → 541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9 → 153
      DUF4524; Domain of unknown function (DUF4524)

    4. XM_006517743.2 → XP_006517806.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517806.1

      UniProtKB/Swiss-Prot
      Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
      Conserved Domains (2) summary
      pfam15016
      Location:455 → 541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9 → 153
      DUF4524; Domain of unknown function (DUF4524)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3UJC8.1 GenPept UniProtKB/Swiss-Prot:Q3UJC8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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