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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001146590.2 → NP_001140062.1 ethanolamine-phosphate phospho-lyase isoform 2
See identical proteins and their annotated locations for NP_001140062.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region compared to variant 1. This results in a shorter protein (isoform 2) compared to isoform 1.
- Source sequence(s)
-
AJ298293, DC327590
- Consensus CDS
-
CCDS54793.1
- UniProtKB/TrEMBL
-
B7Z224
- Related
- ENSP00000392269.2, ENST00000411864.6
- Conserved Domains (2) summary
-
- cd00610
Location:24 → 427
- OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
- COG0160
Location:14 → 431
- GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
-
NM_001146627.2 → NP_001140099.1 ethanolamine-phosphate phospho-lyase isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
- Source sequence(s)
-
AK294072, BC022526, DC327590
- Consensus CDS
-
CCDS54792.1
- UniProtKB/TrEMBL
-
B7Z224
- Related
- ENSP00000427065.1, ENST00000512646.5
- Conserved Domains (1) summary
-
- PRK06148
Location:2 → 383
- PRK06148; hypothetical protein; Provisional
-
NM_001331031.2 → NP_001317960.1 ethanolamine-phosphate phospho-lyase isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) uses an alternate splice site in its 5' terminal exon compared to variant 1. This variant represents translation initiation at a downstream start codon compared to variant 1; the 5'-most initiation codon, as used in variant 1, is associated with a truncated ORF that would render the transcript a candidate for nonsense-mediated decay (NMD). Leaky scanning may allow translation initiation at the downstream start codon to encode an isoform (4) that has a shorter N-terminus, compared to isoform 1. Variants 4 and 6 encode the same isoform (3).
- Source sequence(s)
-
AC097473, BC022526, DC327590
- Consensus CDS
-
CCDS82944.1
- UniProtKB/TrEMBL
- B7Z224, E7ENR6
- Conserved Domains (2) summary
-
- cd00610
Location:1 → 393
- OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
- TIGR00707
Location:1 → 400
- argD; transaminase, acetylornithine/succinylornithine family
-
NM_001331032.2 → NP_001317961.1 ethanolamine-phosphate phospho-lyase isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in its 5' terminal exon compared to variant 1. This variant represents translation initiation at a downstream start codon compared to variant 1; the 5'-most initiation codon, as used in variant 1, is associated with a truncated ORF that would render the transcript a candidate for nonsense-mediated decay (NMD). Leaky scanning may allow translation initiation at the downstream start codon to encode an isoform (4) that has a shorter N-terminus, compared to isoform 1. Variants 4 and 6 encode the same isoform (3).
- Source sequence(s)
-
AK294235, BC022526
- Consensus CDS
-
CCDS82944.1
- UniProtKB/TrEMBL
- B7Z224, E7ENR6
- Related
- ENSP00000423240.1, ENST00000510706.5
- Conserved Domains (2) summary
-
- cd00610
Location:1 → 393
- OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
- TIGR00707
Location:1 → 400
- argD; transaminase, acetylornithine/succinylornithine family
-
NM_001331033.2 → NP_001317962.1 ethanolamine-phosphate phospho-lyase isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in its 5' UTR and lacks a portion of the 5' coding region compared to variant 1. This variant represents translation initiation at a downstream start codon compared to variant 1; the 5'-most initiation codon, as used in variant 1, is associated with a truncated ORF that would render the transcript a candidate for nonsense-mediated decay (NMD). Leaky scanning may allow translation initiation at the downstream start codon to encode an isoform (5) that has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
BC022526, DC311077
- UniProtKB/TrEMBL
-
B7Z224
-
NM_031279.4 → NP_112569.2 ethanolamine-phosphate phospho-lyase isoform 1
See identical proteins and their annotated locations for NP_112569.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
BC022526, DC327590
- Consensus CDS
-
CCDS3682.1
- UniProtKB/Swiss-Prot
- B7Z1Y0, E9PBY0, Q8TBG4, Q9H174
- UniProtKB/TrEMBL
-
B7Z224
- Related
- ENSP00000296486.3, ENST00000296486.8
- Conserved Domains (1) summary
-
- PRK06148
Location:6 → 441
- PRK06148; hypothetical protein; Provisional
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
108742053..108763053 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
112045047..112066004 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)