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    SERTAD4BP SERTA domain containing 4B, pseudogene [ Homo sapiens (human) ]

    Gene ID: 646113, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SERTAD4BPprovided by HGNC
    Official Full Name
    SERTA domain containing 4B, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:44296
    See related
    AllianceGenome:HGNC:44296
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC00643
    Expression
    Biased expression in brain (RPKM 11.4), placenta (RPKM 2.4) and 2 other tissues See more
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    Genomic context

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    See SERTAD4BP in Genome Data Viewer
    Location:
    14q23.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (62117357..62134186)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (56324579..56341409)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (62584075..62600904)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:62298837-62299336 Neighboring gene cytochrome c oxidase subunit 4I1 pseudogene 1 Neighboring gene synaptotagmin 16 Neighboring gene molybdenum cofactor synthesis 3 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:62396930-62397782 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5826 Neighboring gene NANOG hESC enhancer GRCh37_chr14:62537700-62538201 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8503 Neighboring gene tubulin alpha 1c pseudogene Neighboring gene long intergenic non-protein coding RNA 644 Neighboring gene NANOG hESC enhancer GRCh37_chr14:62653909-62654521 Neighboring gene uncharacterized LOC105370529 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:62912186-62912720 Neighboring gene uncharacterized LOC105370528

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • long intergenic non-protein coding RNA 643

    Clone Names

    • FLJ18510, FLJ37214, FLJ39142, FLJ43390

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015358.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL390816

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      62117357..62134186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      56324579..56341409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039785.1: Suppressed sequence

      Description
      NM_001039785.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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