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    Gtse1 G two S phase expressed protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 29870, updated on 27-Nov-2024

    Summary

    Official Symbol
    Gtse1provided by MGI
    Official Full Name
    G two S phase expressed protein 1provided by MGI
    Primary source
    MGI:MGI:1352755
    See related
    Ensembl:ENSMUSG00000022385 AllianceGenome:MGI:1352755
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    B99; Gtse-1
    Summary
    Predicted to enable microtubule binding activity. Predicted to be active in cytoplasmic microtubule. Is expressed in cerebral cortex subventricular zone and cerebral cortex ventricular layer. Orthologous to human GTSE1 (G2 and S-phase expressed 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in liver E14.5 (RPKM 14.6), thymus adult (RPKM 14.1) and 21 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Gtse1 in Genome Data Viewer
    Location:
    15 E2; 15 40.42 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (85743928..85760774)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (85859691..85876573)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene polycystin (PKD) family receptor for egg jelly Neighboring gene tetratricopeptide repeat domain 38 Neighboring gene STARR-seq mESC enhancer starr_39401 Neighboring gene STARR-positive B cell enhancer ABC_E4144 Neighboring gene STARR-positive B cell enhancer ABC_E10874 Neighboring gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase Neighboring gene cadherin, EGF LAG seven-pass G-type receptor 1 Neighboring gene STARR-seq mESC enhancer starr_39409

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasmic microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasmic microtubule IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic microtubule ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in microtubule cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    G2 and S phase-expressed protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168672.2NP_001162143.1  G2 and S phase-expressed protein 1

      See identical proteins and their annotated locations for NP_001162143.1

      Status: VALIDATED

      Source sequence(s)
      AC139513
      Consensus CDS
      CCDS27725.1
      UniProtKB/Swiss-Prot
      O89015, Q8R080, Q9CSG9
      UniProtKB/TrEMBL
      Q542Q3
      Related
      ENSMUSP00000128759.2, ENSMUST00000170629.3
      Conserved Domains (1) summary
      pfam15259
      Location:10153
      GTSE1_N; G-2 and S-phase expressed 1
    2. NM_013882.3NP_038910.1  G2 and S phase-expressed protein 1

      See identical proteins and their annotated locations for NP_038910.1

      Status: VALIDATED

      Source sequence(s)
      AC139513
      Consensus CDS
      CCDS27725.1
      UniProtKB/Swiss-Prot
      O89015, Q8R080, Q9CSG9
      UniProtKB/TrEMBL
      Q542Q3
      Related
      ENSMUSP00000155552.2, ENSMUST00000231074.2
      Conserved Domains (1) summary
      pfam15259
      Location:10153
      GTSE1_N; G-2 and S-phase expressed 1

    RNA

    1. NR_177978.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC139513

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      85743928..85760774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)