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    Stmn1 stathmin 1 [ Mus musculus (house mouse) ]

    Gene ID: 16765, updated on 27-Nov-2024

    Summary

    Official Symbol
    Stmn1provided by MGI
    Official Full Name
    stathmin 1provided by MGI
    Primary source
    MGI:MGI:96739
    See related
    Ensembl:ENSMUSG00000028832 AllianceGenome:MGI:96739
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    19k; Lag; P18; P19; Pig; Smn; Op18; Pp17; Pp18; Pp19; Pr22; Lap18
    Summary
    Predicted to enable tubulin binding activity. Acts upstream of or within several processes, including axonogenesis; mitotic cytokinesis; and negative regulation of microtubule polymerization. Located in cytosol and membrane. Is expressed in early conceptus; genitourinary system; lung; nervous system; and sensory organ. Orthologous to human STMN1 (stathmin 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in CNS E18 (RPKM 553.0), CNS E14 (RPKM 443.2) and 11 other tissues See more
    Orthologs
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    Genomic context

    See Stmn1 in Genome Data Viewer
    Location:
    4 D2.3; 4 66.76 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (134195631..134201154)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (134468320..134473843)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30453 Neighboring gene RIKEN cDNA 1700021N21 gene Neighboring gene STARR-seq mESC enhancer starr_11679 Neighboring gene STARR-positive B cell enhancer ABC_E9602 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:134051274-134051427 Neighboring gene ribosomal protein 10 pseudogene Neighboring gene progestin and adipoQ receptor family member VII

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables tubulin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within axonogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in establishment of skin barrier IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in establishment of skin barrier ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in hepatocyte growth factor receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in hepatocyte growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in microtubule depolymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within microtubule depolymerization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in microtubule depolymerization ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within mitotic cytokinesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within mitotic spindle organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of Rho protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of Rho protein signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of guanyl-nucleotide exchange factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of microtubule polymerization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of microtubule polymerization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of stress fiber assembly IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of stress fiber assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of thrombin-activated receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of thrombin-activated receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuron projection development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within regulation of cell migration IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in regulation of microtubule polymerization or depolymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of microtubule polymerization or depolymerization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to virus IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    stathmin
    Names
    leukemia-associated gene protein
    leukemia-associated phosphoprotein p18
    metablastin
    oncoprotein 18
    oncoprotein18
    phosphoprotein p19
    prosolin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001429876.1NP_001416805.1  stathmin isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL669982
      UniProtKB/Swiss-Prot
      P54227
      UniProtKB/TrEMBL
      Q545B6
    2. NM_001429877.1NP_001416806.1  stathmin isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL669982
      UniProtKB/TrEMBL
      D3Z5N2
    3. NM_019641.5NP_062615.1  stathmin isoform 1

      See identical proteins and their annotated locations for NP_062615.1

      Status: VALIDATED

      Source sequence(s)
      AL669982
      Consensus CDS
      CCDS18772.1
      UniProtKB/Swiss-Prot
      P54227
      UniProtKB/TrEMBL
      Q545B6, Q91XT3, Q9DCP3
      Related
      ENSMUSP00000030636.5, ENSMUST00000030636.11
      Conserved Domains (1) summary
      pfam00836
      Location:5140
      Stathmin; Stathmin family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      134195631..134201154
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)