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    UTP9 Utp9p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856603, updated on 9-Dec-2024

    Summary

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    Official Symbol
    UTP9
    Official Full Name
    Utp9p
    Primary source
    SGD:S000001239
    Locus tag
    YHR196W
    See related
    AllianceGenome:SGD:S000001239; FungiDB:YHR196W; VEuPathDB:YHR196W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables U3 snoRNA binding activity and tRNA binding activity. Involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); positive regulation of transcription by RNA polymerase I; and tRNA re-export from nucleus. Located in nucleolus and rDNA heterochromatin. Part of small-subunit processome and t-UTP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See UTP9 in Genome Data Viewer
    Location:
    chromosome: VIII
    Exon count:
    1
    Sequence:
    Chromosome: VIII; NC_001140.6 (491931..493658)

    Chromosome VIII - NC_001140.6Genomic Context describing neighboring genes Neighboring gene Mdm31p Neighboring gene Nvj1p Neighboring gene Rix1p Neighboring gene Aim18p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001140.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Direct interaction between Utp8p and Utp9p contributes to rRNA processing in budding yeast. Huang YC, et al. Biochem Biophys Res Commun, 2010 Mar 5. PMID 20138832
    2. Utp9p facilitates Msn5p-mediated nuclear reexport of retrograded tRNAs in Saccharomyces cerevisiae. Eswara MB, et al. Mol Biol Cell, 2009 Dec. PMID 19812255, Free PMC Article
    3. The C-terminus of Utp4, mutated in childhood cirrhosis, is essential for ribosome biogenesis. Freed EF, et al. Nucleic Acids Res, 2010 Aug. PMID 20385600, Free PMC Article
    4. Cell populations can use aneuploidy to survive telomerase insufficiency. Millet C, et al. Nat Commun, 2015 Oct 22. PMID 26489519, Free PMC Article
    5. Proteins and RNA sequences required for the transition of the t-Utp complex into the SSU processome. Gallagher JEG. FEMS Yeast Res, 2019 Jan 1. PMID 30445532, Free PMC Article

    See all (89) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables U3 snoRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables tRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase I IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA re-export from nucleus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in rDNA heterochromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small-subunit processome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of t-UTP complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Utp9p
    NP_012066.1
    • Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001140.6 Reference assembly

      Range
      491931..493658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179327.1 → NP_012066.1  TPA: Utp9p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012066.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D3DLE4, P38882
      UniProtKB/TrEMBL
      A6ZTA2, B3LSV6, B5VKC4, C7GRL8, C8Z9Z6, G2WFR9, N1P2J5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38882.1

    Gene LinkOut

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