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    SNR41 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164986, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR41
    Primary source
    SGD:S000007305
    Locus tag
    YNCP0015C
    See related
    AllianceGenome:SGD:S000007305
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA 2'-O-ribose methylation guide activity. Involved in rRNA methylation. Predicted to be located in nucleolus. Predicted to be part of box C/D methylation guide snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR41 in Genome Data Viewer
    Location:
    chromosome: XVI
    Exon count:
    1
    Sequence:
    Chromosome: XVI; NC_001148.4 (719148..719242, complement)

    Chromosome XVI - NC_001148.4Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquitin-protein ligase ASR1 Neighboring gene U2 snRNP complex subunit RDS3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001148.4

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nuclear fate of yeast snoRNA is determined by co-transcriptional Rnt1 cleavage. Grzechnik P, et al. Nat Commun, 2018 May 3. PMID 29725044, Free PMC Article
    2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Kiss-László Z, et al. Cell, 1996 Jun 28. PMID 8674114
    3. A computational screen for methylation guide snoRNAs in yeast. Lowe TM, et al. Science, 1999 Feb 19. PMID 10024243
    4. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Samarsky DA, et al. Nucleic Acids Res, 1999 Jan 1. PMID 9847166, Free PMC Article
    5. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. Piekna-Przybylska D, et al. RNA, 2007 Mar. PMID 17283215, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of small subunit (SSU) rRNA at positions A541 and G1126

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA 2'-O-ribose methylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables rRNA 2'-O-ribose methylation guide activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    enables rRNA 2'-O-ribose methylation guide activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA methylation ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    involved_in rRNA methylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001148.4 Reference assembly

      Range
      719148..719242 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132270.1 RNA Sequence

      Status: REVIEWED

    Gene LinkOut

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