U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC101927948 uncharacterized LOC101927948 [ Homo sapiens (human) ]

    Gene ID: 101927948, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC101927948
    Gene description
    uncharacterized LOC101927948
    See related
    Ensembl:ENSG00000229494
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC101927948 in Genome Data Viewer
    Location:
    2p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (78088730..78127806)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (78093699..78132777)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (78315856..78354932)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927967 Neighboring gene uncharacterized LOC105374817 Neighboring gene 2p12 proximal HERV-mediated recombination region Neighboring gene uncharacterized LOC105374816 Neighboring gene small NF90 (ILF3) associated RNA H Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:78262643-78263582 Neighboring gene MPRA-validated peak3749 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr2:78557243-78557744 Neighboring gene uncharacterized LOC124906027 Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit X pseudogene Neighboring gene CYCS pseudogene 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110287.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC012494, BC042517
      Related
      ENST00000439259.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      78088730..78127806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      78093699..78132777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)