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    gpcp-1 Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1 [ Caenorhabditis elegans ]

    Gene ID: 180600, updated on 9-Dec-2024

    Summary

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    Official Symbol
    gpcp-1
    Official Full Name
    Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1
    Primary source
    WormBase:WBGene00019612
    Locus tag
    CELE_K10B3.6
    See related
    AllianceGenome:WB:WBGene00019612
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See gpcp-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    17
    Sequence:
    Chromosome: X; NC_003284.9 (3106535..3110628, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene C2H2-type domain-containing protein Neighboring gene ncRNA Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase 3 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycerophosphocholine phosphodiesterase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in glycerophospholipid catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1
    NP_001024784.2
    • Confirmed by transcript evidence
    NP_001256998.1
    • Confirmed by transcript evidence
    NP_001367507.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      3106535..3110628 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029613.4 → NP_001024784.2  Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024784.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q21407
      Conserved Domains (3) summary
      cd05814
      Location:5 → 134
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:319 → 621
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
      pfam03009
      Location:323 → 623
      GDPD; Glycerophosphoryl diester phosphodiesterase family

    2. NM_001270069.5 → NP_001256998.1  Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256998.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      G4S033, H2KYS5, H2KYS6, Q21407
      Conserved Domains (3) summary
      cd05814
      Location:5 → 134
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:345 → 647
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
      pfam03009
      Location:349 → 649
      GDPD; Glycerophosphoryl diester phosphodiesterase family

    3. NM_001380928.3 → NP_001367507.1  Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1 [Caenorhabditis elegans]

      Status: REVIEWED

      Conserved Domains (1) summary
      cd05814
      Location:5 → 134
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q21407.2

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