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    • Showing Current items.

    T28H10.2 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 189062, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T28H10.2
    Official Full Name
    ShKT domain-containing protein
    Primary source
    WormBase:WBGene00012143
    Locus tag
    CELE_T28H10.2
    See related
    AllianceGenome:WB:WBGene00012143
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human THAP4 (THAP domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T28H10.2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (12510645..12512949, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase Neighboring gene Neuropeptide-Like Protein Neighboring gene ncRNA Neighboring gene legumain Neighboring gene ncRNA Neighboring gene Calmodulin-like protein;EF-hand domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_506136.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      12510645..12512949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073735.6 → NP_506136.2  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506136.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22857
      Conserved Domains (2) summary
      smart00254
      Location:21 → 56
      ShKT; ShK toxin domain
      cd07828
      Location:72 → 225
      lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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