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    F45E4.5 Secreted protein;YTH domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 185796, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F45E4.5
    Official Full Name
    Secreted protein;YTH domain-containing protein
    Primary source
    WormBase:WBGene00018470
    Locus tag
    CELE_F45E4.5
    See related
    AllianceGenome:WB:WBGene00018470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in defense response to Gram-negative bacterium. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F45E4.5 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (7628166..7629042, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Protein clarinet Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene EGF-like domain-containing protein Neighboring gene Transcriptional activator plp-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nematode Peptides with Host-Directed Anti-inflammatory Activity Rescue Caenorhabditis elegans from a Burkholderia pseudomallei Infection. Lim MP, et al. Front Microbiol, 2016. PMID 27672387, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in defense response to Gram-negative bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Secreted protein;YTH domain-containing protein
    NP_001294145.1
    • Confirmed by transcript evidence
    NP_001294147.1
    • Confirmed by transcript evidence
    NP_001380162.1
    • Confirmed by transcript evidence
    NP_501239.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7628166..7629042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068838.5 → NP_501239.3  Secreted protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501239.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94228

    2. NM_001392337.1 → NP_001380162.1  YTH domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RXU1

    3. NM_001307216.2 → NP_001294145.1  Secreted protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294145.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RQS8

    4. NM_001307218.3 → NP_001294147.1  YTH domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294147.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RRR1
    Nucleotide Protein
    Heading Accession and Version

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